Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f22
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80870.1 68414.m09489 protein kinase family protein contains ...    32   0.25 
At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    30   1.3  
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    28   5.4  
At1g45160.1 68414.m05177 protein kinase family protein contains ...    27   9.4  

>At1g80870.1 68414.m09489 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 692

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 139 RKMMSMSSPLMEISIDGDTM--TIKNSSLLRTVEHKFKLGEEYEEKMPNSII 288
           R +  MS   M +++DG+T    + N  +L   +H+F  G+E     PNS++
Sbjct: 286 RNIKEMSLNSMSLAMDGETKGKEVSNDVVLSCEDHEFDQGKEMNLLSPNSVL 337


>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 265 EKMPNSIIKSVTTITNDSEMETKSVIPD 348
           EK   S  K V T++NDSE  T S+IP+
Sbjct: 189 EKSKTSKKKKVETVSNDSEAGTSSLIPE 216


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 178 SIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEME 327
           ++D +     +   L   + K+K   EY+EK PN+II+ + +I    + +
Sbjct: 715 NVDPEKEKELDEGALEDFKSKWKEMVEYKEKEPNNIIEEILSIGQSKDFD 764


>At1g45160.1 68414.m05177 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 223 RTVEHKFKLGEEYEEKMPN 279
           + VE +F L +EYE+KM N
Sbjct: 370 KVVEQRFYLSDEYEDKMSN 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,773,345
Number of Sequences: 28952
Number of extensions: 231676
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)