Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f19
         (279 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_48660| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_27190| Best HMM Match : PAN (HMM E-Value=0.13)                      27   3.1  
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)           26   5.4  
SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_46281| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_5707| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.1  
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.4  

>SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -2

Query: 257 FLMINKRHIRC---ILCRTYPFSTIKLHNVHKKSNYNN-NKTT 141
           +  +N+R+ R    + CRT  F  +K  N H + +YNN N+T+
Sbjct: 325 YAALNERYARSFTRLFCRT--FKNLKSFNAHAEPSYNNVNQTS 365


>SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 218 CRTYPFSTIKLHNVHKKSNYNNNKTTI 138
           CR++PF T K  N+H+  N+N+++  I
Sbjct: 174 CRSFPFKTSKGFNIHQ--NWNDDEIFI 198


>SB_48660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 218 CRTYPFSTIKLHNVHKKSNYNNNKTTI 138
           CR++PF T K  N+H+  N+N+++  I
Sbjct: 113 CRSFPFKTSKGFNIHQ--NWNDDEIFI 137


>SB_27190| Best HMM Match : PAN (HMM E-Value=0.13)
          Length = 709

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 218 CRTYPFSTIKLHNVHKKSNYNNNKTTI 138
           CR +PF T K  N+H+  N+N+++  I
Sbjct: 594 CRNFPFKTSKGFNIHQ--NWNDDEIFI 618


>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
          Length = 483

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 56  REERKRQAIQHGLEICDQK 112
           ++ERKRQ IQHG E  ++K
Sbjct: 294 KDERKRQNIQHGKEDEEKK 312


>SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 47  FDFREERKRQAIQHGLEICDQKLVIAK 127
           FDF E  K + + HG +  + K ++AK
Sbjct: 191 FDFMERTKEKGVTHGSKARNYKTLLAK 217


>SB_46281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = -2

Query: 230 RCILCRTYPFSTIKLHNV---HKKSNYNNNKT 144
           R ILC  Y  S +K+H +   HK    N N T
Sbjct: 34  RYILCNRYTISLLKMHELFEQHKLRRRNCNST 65


>SB_5707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 191 KLHNVHKKSNYNNNKTT 141
           KL+N H   N+NNN  T
Sbjct: 12  KLYNTHISCNFNNNNNT 28


>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 185 HNVHKKSNYNNNKT 144
           HN HK +N+NNN +
Sbjct: 196 HNNHKNNNHNNNNS 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,381,172
Number of Sequences: 59808
Number of extensions: 107165
Number of successful extensions: 223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)