Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e14
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18800.2 68418.m02234 NADH-ubiquinone oxidoreductase 19 kDa s...    58   4e-09
At5g18800.1 68418.m02233 NADH-ubiquinone oxidoreductase 19 kDa s...    58   4e-09
At3g06310.1 68416.m00725 NADH-ubiquinone oxidoreductase 19 kDa s...    57   7e-09
At5g28295.1 68418.m03435 hypothetical protein                          29   2.9  
At3g24620.1 68416.m03092 expressed protein contains Pfam profile...    28   5.0  
At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat...    27   8.8  

>At5g18800.2 68418.m02234 NADH-ubiquinone oxidoreductase 19 kDa
           subunit (NDUFA8) family protein contains Pfam profile:
           PF05850 NADH-ubiquinone oxidoreductase 19 kDa subunit
          Length = 106

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
 Frame = +2

Query: 167 SGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLA 346
           + + L A + H+G  C   N  ++ C++ + +P KC+++G+ VT C L   + + + C  
Sbjct: 14  TSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCVLGLLKDLHQKCQK 73

Query: 347 EFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ-CMLE 448
           E + Y  C+   + +  F  CRK Q  F++ C L+
Sbjct: 74  EMDDYVGCMYYYTNE--FDLCRKEQEAFEKVCPLK 106


>At5g18800.1 68418.m02233 NADH-ubiquinone oxidoreductase 19 kDa
           subunit (NDUFA8) family protein contains Pfam profile:
           PF05850 NADH-ubiquinone oxidoreductase 19 kDa subunit
          Length = 106

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
 Frame = +2

Query: 167 SGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLA 346
           + + L A + H+G  C   N  ++ C++ + +P KC+++G+ VT C L   + + + C  
Sbjct: 14  TSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCVLGLLKDLHQKCQK 73

Query: 347 EFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ-CMLE 448
           E + Y  C+   + +  F  CRK Q  F++ C L+
Sbjct: 74  EMDDYVGCMYYYTNE--FDLCRKEQEAFEKVCPLK 106


>At3g06310.1 68416.m00725 NADH-ubiquinone oxidoreductase 19 kDa
           subunit (NDUFA8) family protein contains Pfam profile
           PF05850: NADH-ubiquinone oxidoreductase 19 kDa subunit
           (NDUFA8); similar to NADH-ubiquinone oxidoreductase 19
           kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-19KD)
           (CI-19KD) (Complex I-PGIV) (CI-PGIV) (Swiss-Prot:P51970)
           [Homo sapiens]
          Length = 108

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
 Frame = +2

Query: 167 SGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLA 346
           + + L A + H+G  C   N  ++ C++ + +P KC+ +G+ VT C L   + + + C  
Sbjct: 16  TSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLGLLKDLHQRCPK 75

Query: 347 EFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ-CMLE 448
           E + Y  C+   + +  F  CRK Q  F++ C L+
Sbjct: 76  EMDAYVGCMYYYTNE--FELCRKEQEAFEKVCPLK 108


>At5g28295.1 68418.m03435 hypothetical protein
          Length = 131

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 128 PEDSELTVQEVNLSGSTLYAGSFHLGK 208
           P +++LTVQE  L  S ++    HLGK
Sbjct: 16  PNEAQLTVQEAGLLPSAIFGERKHLGK 42


>At3g24620.1 68416.m03092 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315); expression
           supported by MPSS
          Length = 523

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 99  QWW*PPTSIYPKIQS*PSKRSIYLDQ 176
           +WW PP  + P   S PS+R +Y  +
Sbjct: 233 KWWLPPVKVPPGGLSEPSRRMLYFQK 258


>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
           / sel-1 protein-related similar to Sel-1 homolog
           precursor (Suppressor of lin-12-like protein)
           (Sel-1L)(SP:Q9UBV2) {Homo sapiens}
          Length = 678

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 566 SWRGVXGRQPSAPVEASVSWYHGLEPRRNIQSRGVVSLVSQACTDQKHLESSGN 405
           SWR +     S    AS  +Y GL+   +  S G   L+ +A  + +   S+G+
Sbjct: 70  SWRSIFEPDDSTVQAASPQYYSGLKKILSAASEGNFRLMEEAVDEIEAASSAGD 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,115,308
Number of Sequences: 28952
Number of extensions: 247176
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)