Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d07
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              27   3.5  
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    27   3.5  
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               27   6.1  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      26   8.0  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 26   8.0  
SB_34017| Best HMM Match : Pepsin-I3 (HMM E-Value=4.1)                 26   8.0  
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)                   26   8.0  

>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 152 PDALKPSRGATIGIKN-PPMQRTAPPTMLTIRAVKNP 45
           P  +KP + +  G+K+ PP++++ PP    +   K P
Sbjct: 186 PSIIKPVKTSWFGVKSGPPLRQSTPPFYTKLFGTKPP 222


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 176 AAMLPAIIPD-ALKPSRGATIGIKNPPMQRTAPPT 75
           +A++  I+ D A  P R ++ G + PP++RT  PT
Sbjct: 93  SALVNIIMQDGAAPPPRPSSAGAELPPLERTGSPT 127


>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 159 HYSRCAEAEQRCHDWDQKPSHAKNGSA 79
           H S+ AEAE+ C D   KP+ A+   A
Sbjct: 587 HVSKPAEAEKSCADHLSKPAEAEKSRA 613


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 159  HYSRCAEAEQRCHDWDQKPSHAK 91
            + S C E EQ C D   K +H K
Sbjct: 2222 YISSCVETEQSCDDLGPKKTHVK 2244


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 191  YDWAE-AAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKN 48
            Y WA   A  P ++  A KP+  AT  +  PP     P   +   +V++
Sbjct: 911  YSWANPTATKPKVLTSASKPTSYATKTVPPPPKPTQHPTKSVPASSVRS 959


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 208 PLNSRNTTGLKLQCFPPLFPMR*SRAEVPRLGSKTLPCK 92
           P+ ++++        PP F +     EVP+ GS TL CK
Sbjct: 621 PVGTKSSEAFLKIFVPPSFDVLPKDLEVPQGGSPTLQCK 659


>SB_34017| Best HMM Match : Pepsin-I3 (HMM E-Value=4.1)
          Length = 153

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 177 SCNASRHYSRCAEAEQRCHDWDQKPSHAKNGSAYDVNY 64
           +C  +  Y+R ++  +  +D+ Q     K G A D+NY
Sbjct: 66  TCTRTSQYTRESKPNKIFNDFSQTSKPKKAGIAMDINY 103


>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
          Length = 1195

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 13  LVRSYCDLRIMGFFTALIVNIVGGAVLCMGGFLIPIV 123
           LVR   D  ++ +  ALIV+++GG  L +  +  P++
Sbjct: 757 LVRLVSDCLVVSWVIALIVSVIGGVFLLLVVYEEPLM 793


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,799,943
Number of Sequences: 59808
Number of extensions: 238315
Number of successful extensions: 492
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)