Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0985
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    31   0.62 
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    31   0.62 
X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2 prot...    30   1.4  
U50198-3|AAA91261.2|  503|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen prot...    27   7.7  

>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 20/46 (43%), Positives = 20/46 (43%)
 Frame = +2

Query: 2    AHLAAHAQASTSHGAWSPGYGGYASDAHYGAPAAGLYKYGPAPLAH 139
            AH  A     T  GA   G  G    A YGAP      YGPAP AH
Sbjct: 1026 AHFGAQGAQGTQFGA--QGAQG-PPPASYGAPTPPQASYGPAPGAH 1068


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 20/46 (43%), Positives = 20/46 (43%)
 Frame = +2

Query: 2    AHLAAHAQASTSHGAWSPGYGGYASDAHYGAPAAGLYKYGPAPLAH 139
            AH  A     T  GA   G  G    A YGAP      YGPAP AH
Sbjct: 1046 AHFGAQGAQGTQFGA--QGAQG-PPPASYGAPTPPQASYGPAPGAH 1088


>X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2
           protein.
          Length = 231

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 23  QASTSHGAWSPGYGGYASDAHYG--APAAGLYKYGPA 127
           Q+  + G  +P  G Y S   +G  APA G Y+ GPA
Sbjct: 129 QSGPAFGGAAPAGGAYQSGPAFGGAAPAGGAYQSGPA 165


>U50198-3|AAA91261.2|  503|Caenorhabditis elegans Hypothetical
           protein R04B3.3 protein.
          Length = 503

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 47  WSPGYGGYASDAHYGAPAAGLYKYGPAP 130
           +SPGYGGY     Y  PAA  + YGP P
Sbjct: 27  YSPGYGGY-----YAPPAAS-FNYGPFP 48


>AC006630-5|AAK68323.1|  335|Caenorhabditis elegans Collagen protein
           165 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +2

Query: 41  GAWSP--GYGGYASDAHYGAPAAGLYKYGPAPLAHDG 145
           G W P  G GG A    YGAPA       PAP    G
Sbjct: 82  GQWIPDSGAGGGAGKEDYGAPATEQPYNAPAPSPSHG 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,499,838
Number of Sequences: 27780
Number of extensions: 116101
Number of successful extensions: 410
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)