Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0985
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04170.1 68418.m00405 calcium-binding EF hand family protein ...    35   0.036
At5g45350.1 68418.m05567 proline-rich family protein contains pr...    30   1.0  
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    29   1.8  
At4g24500.2 68417.m03513 hydroxyproline-rich glycoprotein family...    29   3.1  
At4g24500.1 68417.m03512 hydroxyproline-rich glycoprotein family...    29   3.1  
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein...    29   3.1  
At2g25970.1 68415.m03117 KH domain-containing protein                  27   7.2  
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila...    27   7.2  
At5g51060.1 68418.m06329 respiratory burst oxidase protein C (Rb...    27   9.5  

>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
           similarity to peflin [Homo sapiens] GI:6015440; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 354

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 26  ASTSHGAWSPGYGGYASDAHYGAPAAGLYKYGPAP 130
           AS+ HG    GYGGY   A YG+P A L   G AP
Sbjct: 151 ASSGHGG---GYGGYPPQASYGSPFASLIPSGFAP 182


>At5g45350.1 68418.m05567 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 177

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 14  AHAQASTSHGAWSPGYGGYASDAHYGA--PAAGLYKYGPAPLAHDG 145
           A+  A    GA+ P  GGY     YG   PA G   Y PAP  H G
Sbjct: 43  AYPPAGYPPGAYPPAPGGYPPAPGYGGYPPAPGYGGYPPAP-GHGG 87



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +2

Query: 50  SPGYGGYASDAHYGA--PAAGLYKYGPA--PLAHDG 145
           +PGYGGY     YG   PA G   Y PA  P  H G
Sbjct: 64  APGYGGYPPAPGYGGYPPAPGHGGYPPAGYPAHHSG 99


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 11  AAHAQASTSHGAWSPGYGGYASDAHYGAPAA 103
           A   QA  S G  S GYG   +D+ YG P+A
Sbjct: 319 AVMGQAGASAGYGSQGYGYGGNDSSYGTPSA 349


>At4g24500.2 68417.m03513 hydroxyproline-rich glycoprotein family
           protein
          Length = 290

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +2

Query: 8   LAAHAQASTSHGA-----WSPGYGGYASDAHYGAPAAGLYKYGPAPLAHDG 145
           L +  QA T+HG      + P    + S +H G PA     + P P+ H G
Sbjct: 78  LCSEYQAQTNHGGFHAAHYEPRGMAHLSPSHRGPPAGWNNNFRPPPVNHSG 128


>At4g24500.1 68417.m03512 hydroxyproline-rich glycoprotein family
           protein
          Length = 319

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +2

Query: 8   LAAHAQASTSHGA-----WSPGYGGYASDAHYGAPAAGLYKYGPAPLAHDG 145
           L +  QA T+HG      + P    + S +H G PA     + P P+ H G
Sbjct: 107 LCSEYQAQTNHGGFHAAHYEPRGMAHLSPSHRGPPAGWNNNFRPPPVNHSG 157


>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 411

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 35  SHGAWSPGYGGYASDAHYGAPAAGLYKYGPAPLAHDG 145
           S G  +PGYG  A+ + YG P A      P+  ++ G
Sbjct: 305 SSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQG 341


>At2g25970.1 68415.m03117 KH domain-containing protein 
          Length = 632

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +2

Query: 53  PGYGGYASDAHY-GAPAAGLYKYGPAP 130
           PGYGGY     Y G P  G   YG  P
Sbjct: 340 PGYGGYMQPGAYPGPPQYGQSPYGSYP 366


>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
           to RNA-binding protein GB:S46286 from [Nicotiana
           sylvestris]
          Length = 289

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 41  GAWSPGYGGYASDAHYGAPAAG 106
           G   PG G  ASD  YGAPA G
Sbjct: 120 GFGGPGGGYGASDGGYGAPAGG 141


>At5g51060.1 68418.m06329 respiratory burst oxidase protein C
           (RbohC) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein C from Arabidopsis thaliana
           [gi:3242785]
          Length = 905

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 23  QASTSHGAWSPGYGGYASDAHYGAPAAGLYKY 118
           +A   HGA +P +     D  YGAPA    KY
Sbjct: 684 RADMLHGANNPDFPKVLIDGPYGAPAQDYKKY 715


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,083,189
Number of Sequences: 28952
Number of extensions: 104711
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)