Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0979
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59960.1 68418.m07520 expressed protein                             29   3.5  
At3g13010.1 68416.m01621 hAT dimerisation domain-containing prot...    28   6.1  
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami...    28   8.1  
At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein ...    28   8.1  

>At5g59960.1 68418.m07520 expressed protein
          Length = 359

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 254 KKVKLNLIRQKYLCI*HFLFIINSQDEMVKYLTN 153
           KK+ +   R+ YL +  F+F  NS D++  +L N
Sbjct: 182 KKIPIQAQRELYLLLSRFIFFYNSVDKLDSFLRN 215


>At3g13010.1 68416.m01621 hAT dimerisation domain-containing protein
           contains Pfam profile PF04937: Protein of unknown
           function (DUF 659), weak hit to PF05699: hAT family
           dimerisation domain
          Length = 572

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -1

Query: 784 GFRYTCYHHHH----KENTAFFFRYSVQNYNSTKNVLNGIRTNR*SRWALCSLYMNGFVP 617
           G ++  Y +H     K+N A+ F+Y  Q Y  T NV++ +  N  +       ++N   P
Sbjct: 380 GSKHVAYAYHFIESIKKNVAWTFKYERQFYEPTWNVIDDVWHNNHNPLHAAGYFLN---P 436

Query: 616 LIYSRGD 596
           + Y   D
Sbjct: 437 MAYYSDD 443


>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 708

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = -1

Query: 778 RYTCYHHHHK------ENTAFFFRYSVQNYNSTKNVLNGIRTNR*SRWA 650
           RY+C +H  K      +  +F +RY++   N     L G + +   RWA
Sbjct: 564 RYSCLNHMRKLCACPCDRKSFLYRYTMDELNLLVEALEGKKLSSMFRWA 612


>At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 329

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/32 (28%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -1

Query: 775 YTCYHHHHKENTAFFFRYS-VQNYNSTKNVLN 683
           ++C+H+ H  +++F F+ S V+N+   +N+++
Sbjct: 53  FSCFHNSHASSSSFGFQNSHVENHMMKRNIIS 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,050,496
Number of Sequences: 28952
Number of extensions: 245547
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)