Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0061
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26160.1 68415.m03139 F-box family protein contains F-box dom...    29   3.3  
At4g21600.1 68417.m03128 bifunctional nuclease, putative similar...    28   7.5  

>At2g26160.1 68415.m03139 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 359

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 116 IDLFKYKVIRVNRWYEMSIFKLYIIHG 196
           +DL K++V  + + YE+ IF  Y+I G
Sbjct: 112 LDLLKFEVSEIRQSYEIHIFDKYLIQG 138


>At4g21600.1 68417.m03128 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 296

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 189 FMATNMYVVSESENYRNLINYRFDQIIVFLSTFV 290
           F  TN  ++S SEN +N+++Y   + ++FLS ++
Sbjct: 114 FNYTNQ-LMSASENSQNIVHYNLTEALLFLSHYM 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,264,477
Number of Sequences: 28952
Number of extensions: 230111
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)