Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120511.Seq
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                28   6.4  
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 409

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 620 PQVIPITYKTPYHLKLLCLSTFTIFILY 703
           P  I ITY +PYH+ ++  S +  +I+Y
Sbjct: 55  PYHIYITYASPYHIYIIYASPYHNYIIY 82



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 635 ITYKTPYHLKLLCLSTFTIFILY 703
           + Y +PYH  ++  ST+ I+I+Y
Sbjct: 260 VIYASPYHTYIIYTSTYHIYIIY 282


>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 77  LSASMSNTNDTNA*CVQSLGSRERQMRQYDAMRRDTEPF 193
           LS+ M++ N     C+QS+    ++++ +DA +   E F
Sbjct: 96  LSSKMAHDNSPYKHCIQSINVNSQELKYFDASKLGEEAF 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,959,050
Number of Sequences: 59808
Number of extensions: 288935
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)