Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1663
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    33   0.040
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    33   0.053
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    28   1.5  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    27   3.5  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   4.6  

>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +3

Query: 450 WWRDFQGRKQ----HYINLDPTDFFDINTFVTHPWEFSDAATTDVFVINNK 590
           WW D     +    H + +DP + +DI+ F  HPW   ++   + F    K
Sbjct: 316 WWDDISDSAKDLITHLLTVDPRERYDIHQFFQHPWIKGESKMPENFTYKPK 366


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 32.7 bits (71), Expect = 0.053
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +3

Query: 450 WWRDFQGRKQ----HYINLDPTDFFDINTFVTHPW 542
           WW D     +    H + +DP   +DI+ F+ HPW
Sbjct: 386 WWDDISKSAKDLISHLLTVDPESRYDIHQFLAHPW 420


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 254 TDVLADSKSFRLAQQGYQNVRSRDD 328
           +D+LAD K  RL +QG + +R  D+
Sbjct: 531 SDILADIKKQRLVEQGCEPIRKTDE 555


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 224 EVRKIIFNIHTDVLADSKSFRLAQQGY 304
           E RK++   HT  ++ +  ++LAQ G+
Sbjct: 319 ETRKLVLRTHTTAVSANMLYKLAQNGF 345


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 300 PCCANRKLLLSANTSVCILKIILRTSERSRVKF 202
           P   N  L L  NTS C+  I+LRT +  R +F
Sbjct: 627 PLIINDGLPLDPNTSHCLGLIVLRTIDLKRNEF 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,613
Number of Sequences: 5004
Number of extensions: 64116
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)