Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1663
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0225 - 10572223-10572465,10572617-10572862,10573140-105732...    31   0.67 
08_01_0767 + 7403930-7404214,7404403-7404783                           30   2.1  
10_08_0778 + 20492822-20493920,20494605-20494648                       29   2.7  
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    28   6.3  
02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270     28   8.3  

>05_03_0225 -
           10572223-10572465,10572617-10572862,10573140-10573241,
           10574234-10574413,10575076-10575156
          Length = 283

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +3

Query: 426 RSSRPVAVWWRDFQGRKQHYINLDPTDFFDIN---TFVTHPWEFSDAATTDVF--VINNK 590
           R  RP  + W D  GR+         D+FD N    F+++P   S ++T D    ++ N 
Sbjct: 78  RQYRPDTIRWEDIPGREHEARRTYIADYFDKNGRIVFISNPTIKSKSSTKDQIKQLVYNL 137

Query: 591 EIF 599
           EIF
Sbjct: 138 EIF 140


>08_01_0767 + 7403930-7404214,7404403-7404783
          Length = 221

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 632 KQDLTYNRRWSKYLLIVYHEDVCGCSIRKLPRMGDKRI 519
           K+DL    +W+K L   Y E    C +  L + GDK++
Sbjct: 162 KEDLETVHKWTKNLETQYDETASKCKLGDLFKYGDKKV 199


>10_08_0778 + 20492822-20493920,20494605-20494648
          Length = 380

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 688 NMATLLSCRTGTVIFQLVLNKT*PTIGGGRNISLLFITKTSVVAASENSHGWVTNVLISK 509
           N+     C  G     L L  T   + GG+N S  F+ KTS  ++   S+ +    L   
Sbjct: 197 NVTAFSYCLAGKSSGALFLGATAKQLAGGKNSSTPFVIKTSAGSSDNGSNPYYMVKLAGI 256

Query: 508 KSVGSRL 488
           K+ G+ L
Sbjct: 257 KTGGAPL 263


>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 440 WPGGTVREADECPSRRHKRFHDH 372
           W G    EA E   RRHKR H H
Sbjct: 676 WDGVVGSEAQERARRRHKRAHSH 698


>02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270
          Length = 248

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 473 PTLEVPPPDRHWPGGTVREADEC 405
           P   +PPP   WP G  REA+ C
Sbjct: 52  PAFAIPPPPTQWPLG--REAEAC 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,273,213
Number of Sequences: 37544
Number of extensions: 432842
Number of successful extensions: 1076
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)