Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1663
(706 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF010238-1|AAB64200.1| 213|Homo sapiens von Hippel-Lindau tumor... 56 2e-07
BC130598-1|AAI30599.1| 139|Homo sapiens von Hippel-Lindau tumor... 52 2e-06
BC130596-1|AAI30597.1| 139|Homo sapiens von Hippel-Lindau tumor... 52 2e-06
AY494836-1|AAS48916.1| 139|Homo sapiens von-Hippel-Lindau-like ... 52 2e-06
BC014608-1|AAH14608.1| 361|Homo sapiens spermatogenesis associa... 33 0.75
AY963797-1|AAY33662.1| 361|Homo sapiens spermatogenesis-related... 33 0.75
AL445428-2|CAH70554.1| 361|Homo sapiens novel protein (FLJ25725... 33 0.75
AL354659-3|CAH70665.1| 361|Homo sapiens novel protein (FLJ25725... 33 0.75
AK098591-1|BAC05343.1| 361|Homo sapiens protein ( Homo sapiens ... 33 0.75
EF507247-1|ABP65324.1| 40|Homo sapiens mutant VHL protein. 33 1.3
>AF010238-1|AAB64200.1| 213|Homo sapiens von Hippel-Lindau tumor
suppressor protein.
Length = 213
Score = 55.6 bits (128), Expect = 2e-07
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +3
Query: 417 FTNRSSRPVAVWWRDFQGRKQHYINLDPTDFFDINTFVTHPWEFSDAATTDVFVINNKEI 596
F NRS R V W +F G Q Y L P I+++ H W F DA T D ++N E+
Sbjct: 76 FCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVNQTEL 135
Query: 597 FRPP-PIVGQVLFRTNWNITVPVRQLR 674
F P + GQ +F NIT+PV L+
Sbjct: 136 FVPSLNVDGQPIFA---NITLPVYTLK 159
>BC130598-1|AAI30599.1| 139|Homo sapiens von Hippel-Lindau tumor
suppressor-like protein.
Length = 139
Score = 52.0 bits (119), Expect = 2e-06
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 423 NRSSRPVAVWWRDFQGRKQHYINLDPTDFFDINTFVTHPWEFSDAATTDVFVINNKEIFR 602
N S R V W ++ G+ Y+ L P F I+ F +HPW F DA T D ++N E+F
Sbjct: 60 NHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRDARTHDKLLVNQTELFV 119
Query: 603 PPPIV-GQVLF 632
P V GQ +F
Sbjct: 120 PSSNVNGQPVF 130
>BC130596-1|AAI30597.1| 139|Homo sapiens von Hippel-Lindau tumor
suppressor-like protein.
Length = 139
Score = 52.0 bits (119), Expect = 2e-06
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 423 NRSSRPVAVWWRDFQGRKQHYINLDPTDFFDINTFVTHPWEFSDAATTDVFVINNKEIFR 602
N S R V W ++ G+ Y+ L P F I+ F +HPW F DA T D ++N E+F
Sbjct: 60 NHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRDARTHDKLLVNQTELFV 119
Query: 603 PPPIV-GQVLF 632
P V GQ +F
Sbjct: 120 PSSNVNGQPVF 130
>AY494836-1|AAS48916.1| 139|Homo sapiens von-Hippel-Lindau-like
protein protein.
Length = 139
Score = 52.0 bits (119), Expect = 2e-06
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 423 NRSSRPVAVWWRDFQGRKQHYINLDPTDFFDINTFVTHPWEFSDAATTDVFVINNKEIFR 602
N S R V W ++ G+ Y+ L P F I+ F +HPW F DA T D ++N E+F
Sbjct: 60 NHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRDARTHDKLLVNQTELFV 119
Query: 603 PPPIV-GQVLF 632
P V GQ +F
Sbjct: 120 PSSNVNGQPVF 130
>BC014608-1|AAH14608.1| 361|Homo sapiens spermatogenesis associated
17 protein.
Length = 361
Score = 33.5 bits (73), Expect = 0.75
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 405 AFIRFTNRSSRPVAVWWRDFQGRKQHYINL 494
A+IR NR + WWR F GRKQ+ + +
Sbjct: 50 AYIRHLNRIVTIIQKWWRSFLGRKQYQLTV 79
>AY963797-1|AAY33662.1| 361|Homo sapiens spermatogenesis-related
protein 11 protein.
Length = 361
Score = 33.5 bits (73), Expect = 0.75
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 405 AFIRFTNRSSRPVAVWWRDFQGRKQHYINL 494
A+IR NR + WWR F GRKQ+ + +
Sbjct: 50 AYIRHLNRIVTIIQKWWRSFLGRKQYQLTV 79
>AL445428-2|CAH70554.1| 361|Homo sapiens novel protein (FLJ25725)
protein.
Length = 361
Score = 33.5 bits (73), Expect = 0.75
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 405 AFIRFTNRSSRPVAVWWRDFQGRKQHYINL 494
A+IR NR + WWR F GRKQ+ + +
Sbjct: 50 AYIRHLNRIVTIIQKWWRSFLGRKQYQLTV 79
>AL354659-3|CAH70665.1| 361|Homo sapiens novel protein (FLJ25725)
protein.
Length = 361
Score = 33.5 bits (73), Expect = 0.75
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 405 AFIRFTNRSSRPVAVWWRDFQGRKQHYINL 494
A+IR NR + WWR F GRKQ+ + +
Sbjct: 50 AYIRHLNRIVTIIQKWWRSFLGRKQYQLTV 79
>AK098591-1|BAC05343.1| 361|Homo sapiens protein ( Homo sapiens
cDNA FLJ25725 fis, clone TST05462. ).
Length = 361
Score = 33.5 bits (73), Expect = 0.75
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 405 AFIRFTNRSSRPVAVWWRDFQGRKQHYINL 494
A+IR NR + WWR F GRKQ+ + +
Sbjct: 50 AYIRHLNRIVTIIQKWWRSFLGRKQYQLTV 79
>EF507247-1|ABP65324.1| 40|Homo sapiens mutant VHL protein.
Length = 40
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 534 HPWEFSDAATTDVFVINNKEIFRPP-PIVGQVLFRTNWNITVP 659
H W F DA T D ++N E+F P + GQ +F NIT+P
Sbjct: 1 HLWLFRDAGTPDGLLVNQTELFVPSLNVDGQPIFA---NITLP 40
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,960,043
Number of Sequences: 237096
Number of extensions: 2331092
Number of successful extensions: 4511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4511
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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