Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1663
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66561-6|CAA91456.1|  174|Caenorhabditis elegans Hypothetical pr...    55   6e-08
U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z66561-6|CAA91456.1|  174|Caenorhabditis elegans Hypothetical
           protein F08G12.4 protein.
          Length = 174

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = +3

Query: 411 IRFTNRSSRPVAVWWRDFQGRKQHYINLDPTDFFDINTFVTHPWEFSDAATTDVFVINNK 590
           +RF NR + PV V+W +   +   Y  L    + DI TF  HPW    +      ++N K
Sbjct: 28  VRFLNRCAYPVDVFWLNPSKQPTKYGTLAQKKYLDIKTFKDHPWVARRSFDGCKVLVNEK 87

Query: 591 EIFRPPPIVG-QVLFRTNWNITVPVRQLRRVA 683
           E+F P P     ++ R +  IT+ V+ LR +A
Sbjct: 88  EVFWPEPAPRMNLIVRNHCVITMKVQSLREIA 119


>U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical
           protein M01E11.3 protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 677 SPQLSHRYSNIPISPKQDLTYNRR-WSKYLLIVYHEDVC 564
           SPQL  R +++ I P  D  +NR+ W    ++V    +C
Sbjct: 781 SPQLFQRMADLQIVPFGDALFNRKFWMMSKIVVIMPSIC 819


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
          protein T04F8.6 protein.
          Length = 766

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 20 DDNINPKDLKTFFLSCNNEK 79
          D+N++ K+LK  F SCN+++
Sbjct: 10 DENVHVKELKRLFNSCNSDR 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,021
Number of Sequences: 27780
Number of extensions: 377920
Number of successful extensions: 928
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)