Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_F21
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    26   0.40 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 413 YNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGG---RLDWANKNAQAAIDINRQIGGR 580
           Y + ++  D+  +TG AYG   + PG  S  + G     ++ N   +   ++ R  GGR
Sbjct: 60  YKQRVY--DKNGMTGDAYGGLNIRPGQPSRQHAGFEFGKEYKNGFIKGQSEVQRGPGGR 116


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 802 IYTEANSSFFGERQTNIIL*MMGLC 728
           +Y  A+  F G  QTN+++   G C
Sbjct: 143 MYNSADEGFDGTYQTNVVVTHNGSC 167


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 802 IYTEANSSFFGERQTNIIL*MMGLC 728
           +Y  A+  F G  QTN+++   G C
Sbjct: 143 MYNSADEGFDGTYQTNVVVTHNGSC 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,464
Number of Sequences: 438
Number of extensions: 5854
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)