Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_F19
         (1056 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.16 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 580 APXAPPXLXPPPPXXXPPP-XPXVXPPRRXPA 672
           +P AP    PP P   PPP  P   PP + P+
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 583 PXAPPXLXPPPPXXXPPPXPXVXPPRRXPAPG 678
           P   P   P  P    PP P   PP   P PG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGP-PG 53


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
 Frame = -2

Query: 677 PGAGXRRGGXTXGXGG----GXXXGGGGXSXGGAXG 582
           PG+    G  T   GG    G   GGGG   G A G
Sbjct: 22  PGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,780
Number of Sequences: 438
Number of extensions: 4962
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35186292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)