Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_F16
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   6.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  CAQDADNFVFITHRCR 116
           CA D  ++ + THRCR
Sbjct: 169 CATDFSSWPYDTHRCR 184


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 587 QYRMVRVTRASPCPARRDHVQTSEHLSEQCINAAINFNNS 706
           +YR  R T       R++  ++ EH     ++   N+NN+
Sbjct: 55  EYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNN 94


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 587 QYRMVRVTRASPCPARRDHVQTSEHLSEQCINAAINFNNS 706
           +YR  R T       R++  ++ EH     ++   N+NN+
Sbjct: 55  EYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNN 94


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 587 QYRMVRVTRASPCPARRDHVQTSEHLSEQCINAAINFNNS 706
           +YR  R T       R++  ++ EH     ++   N+NN+
Sbjct: 55  EYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNN 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,162
Number of Sequences: 438
Number of extensions: 5016
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)