Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_F03
         (880 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF204173-1|AAG23406.1|  366|Homo sapiens popeye protein 2 protein.     33   1.8  
AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.         31   5.5  
AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.         31   5.5  
AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.         31   5.5  
AF174600-1|AAF04521.1|  255|Homo sapiens F-box protein Fbx20 pro...    31   5.5  

>AF204173-1|AAG23406.1|  366|Homo sapiens popeye protein 2 protein.
          Length = 366

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +1

Query: 517 RLLAFFHRLRPPXRASQKSTLKSEVAKPDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPP 696
           RL + +H L P    +   + K +    +  +  P  +P  L +   CF P R P T P 
Sbjct: 263 RLPSLYHVLGPTAADAGPESEKGDEEVCEPAVSPPQATPTSLQQTPPCFTPPRFPPTFPA 322

Query: 697 FSLR 708
            S R
Sbjct: 323 LSYR 326


>AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 598 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 729
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253


>AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 598 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 729
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253


>AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 598 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 729
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253


>AF174600-1|AAF04521.1|  255|Homo sapiens F-box protein Fbx20
           protein.
          Length = 255

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 598 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 729
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 84  PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,676,186
Number of Sequences: 237096
Number of extensions: 2620299
Number of successful extensions: 12061
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12055
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)