Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_E09
         (944 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.76 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +3

Query: 738  PXRSPXGXPPPGXPPXSRPXXLXGXPSXPFPPXGXXGGLXXXPPP 872
            P  SP G P P       P  + G P  PF P          P P
Sbjct: 1131 PFTSPGGIPGPNG--IKMPSFMEGMPHLPFTPFNFWNPPPFMPSP 1173


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 747 SPXGXPPPGXPPXSRP 794
           +P   PPPG PP + P
Sbjct: 41  NPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 738 PXRSPXGXPPPGXPPXSRPXXLXGXPS 818
           P + P    PPG PP   P  +   P+
Sbjct: 42  PSQGPPPGGPPGAPPSQNPSQMMISPA 68



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 569 PGXTXXPXRXPXGPXPRKXXLXRGXPPXPPPPGXXP 676
           PG    P + P  P           PP   PPG  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 818 PPFPPXGXXGGXXPXXPPXXXP 883
           PP P  G   G  P  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.154    0.560 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,041
Number of Sequences: 438
Number of extensions: 6991
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)