Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_D22
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   8.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 752 TRRILEPWWWTWEQQG 799
           TR+ILEP+ + +EQ+G
Sbjct: 943 TRKILEPFGFGFEQRG 958


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 812 PKGCFLVVPRSTTMVPGSSLLLGPPKFPLIFFXAACLDCYVD*FV 678
           P   FLV P +   +PGSS+      F LI        C V+ F+
Sbjct: 356 PGLAFLVYPSAVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFI 400


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 812 PKGCFLVVPRSTTMVPGSSLLLGPPKFPLIFFXAACLDCYVD*FV 678
           P   FLV P +   +PGSS+      F LI        C V+ F+
Sbjct: 409 PGLAFLVYPSAVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFI 453


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 257 VDHRSLNGKEVVVVITEDFVIRDLSIIDLNRXQGG 361
           +D    NGK  V ++  D V   L++I      GG
Sbjct: 68  IDVDRWNGKTFVTILRNDGVPSSLNVISNKIGNGG 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,421
Number of Sequences: 438
Number of extensions: 2820
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)