Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_C24
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    25   0.76 
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           25   1.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   7.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   9.4  

>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +3

Query: 822 NCTCEGKSTGHC-KGLLMC 875
           NC   GK+ GHC KG+ +C
Sbjct: 63  NCLSLGKAGGHCEKGVCIC 81


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +3

Query: 822 NCTCEGKSTGHC-KGLLMC 875
           NC   GK+ GHC KG+ +C
Sbjct: 38  NCHSLGKAGGHCEKGVCIC 56


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 394 NLQICSKFYVWQYSLKQHVFQFCMS*QFSLSCYH 293
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 82  SLRTPSNLFVINLAISNFLMMFCMSPPMVINCYY 115


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 394 NLQICSKFYVWQYSLKQHVFQFCMS*QFSLSCYH 293
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 48  SLRTPSNLFVINLAISDFLMMFCMSPPMVINCYY 81


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 105 LIGRFDRMLHLFCWIQIKSKILRIPYXG 22
           +I   + +LHLFC + ++    RIP+ G
Sbjct: 276 IIANLNFILHLFCLLDVQ---WRIPFNG 300


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 220 QGVLPPPSEVVENGLKIVTEYKY 288
           QGV    S  + N LK++ E+KY
Sbjct: 15  QGVTDIHSRNLTNSLKVIYEWKY 37


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 388 QICSKFYVWQYSLKQHVFQFCMS*QFSLSCYHC-RIY 281
           Q+C K    + SLK+HV       Q    C  C R+Y
Sbjct: 9   QLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVY 45


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 822 NCTCEGKSTGHCK 860
           NC   GK+ GHC+
Sbjct: 63  NCLSLGKAGGHCE 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,309
Number of Sequences: 438
Number of extensions: 4776
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)