Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_C02
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   4.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   4.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   4.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.5  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -2

Query: 695 NGYKXSXSXTNFTNKAFFSLHXSCGLSQLINVFYHVWIP 579
           N YK + +  N+  K +++++    +   + V+Y  ++P
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLP 131


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -2

Query: 695 NGYKXSXSXTNFTNKAFFSLHXSCGLSQLINVFYHVWIP 579
           N YK + +  N+  K +++++    +   + V+Y  ++P
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLP 131


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -2

Query: 695 NGYKXSXSXTNFTNKAFFSLHXSCGLSQLINVFYHVWIP 579
           N YK + +  N+  K +++++    +   + V+Y  ++P
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLP 131


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -2

Query: 695 NGYKXSXSXTNFTNKAFFSLHXSCGLSQLINVFYHVWIP 579
           N YK + +  N+  K +++++    +   + V+Y  ++P
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLP 131


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 397 LTCLLHPSRVCRQKMLMPAKNK 462
           LT LLHPSR  + K+    K K
Sbjct: 12  LTFLLHPSRCTQGKVNYREKEK 33


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 397 LTCLLHPSRVCRQKMLMPAKNK 462
           LT LLHPSR  + K+    K K
Sbjct: 12  LTFLLHPSRCTQGKVNYREKEK 33


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 63  RYTKLKITMAKPKG 104
           RY+KLK    KPKG
Sbjct: 26  RYSKLKRNWRKPKG 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,137
Number of Sequences: 438
Number of extensions: 3314
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)