Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_B04
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.97 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 530 PXPPPPPPXGXG 495
           P PPPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 502 GXGEXPXPGXPPPXPPXXXG 443
           G  + P    PPP PP   G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 818 PPEXXXPPPPXXNPG 862
           PP+   PPPP  + G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = -3

Query: 599 GERGXXPXXXXAPRGXGGGXXRXPXPPPPPPXGXGGXAXPGXPPPPXP 456
           G  G  P    +P+    G    P   PPP    GG   PG PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPP----GGP--PGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +3

Query: 471 GXPGXGXSPXPXGGGGGGXGXPXXTXPPPPGG 566
           G PG   SP            P  +  PPPGG
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
 Frame = +2

Query: 842 PPXXNPGXPRQPXXPPPPXG-XGAXP 916
           P     G P  P   PPP G  GA P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 818 PPEXXXPPPPXXNPGXP 868
           PP     PPP   PG P
Sbjct: 39  PPNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 493 EXPXPGXPPPXPP 455
           + P PG PP  PP
Sbjct: 44  QGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 536  RXPXPPPPPPXGXGGXA 486
            R   PPPPPP    G A
Sbjct: 1351 RQQQPPPPPPPPSSGQA 1367


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 530  PXPPPPPP 507
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,493
Number of Sequences: 438
Number of extensions: 6389
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)