Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_P03
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   1.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   2.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   2.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 590 GNGNRHATTTVCSCISSKILFSISCIICSTPNITTLL 480
           G GN H T     C++  +  +++ +   +P I  +L
Sbjct: 728 GTGNAHETQITTLCVAISLSATVTLVCLYSPKIYIIL 764


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 590 GNGNRHATTTVCSCISSKILFSISCIICSTPNITTLL 480
           G GN H T     C++  +  +++ +   +P I  +L
Sbjct: 818 GTGNAHETQITTLCVAISLSATVTLVCLYSPKIYIIL 854


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 653 FTSYFQTVSTPCPIVSTGTIVGNGNRHATTTVCSCISSKILFSISCI 513
           FT +F  +    P  +   I   GNR   T V + + +    ++SCI
Sbjct: 285 FTIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSCI 331


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 653 FTSYFQTVSTPCPIVSTGTIVGNGNRHATTTVCSCISSKILFSISCI 513
           FT +F  +    P  +   I   GNR   T V + + +    ++SCI
Sbjct: 285 FTIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSCI 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,158
Number of Sequences: 438
Number of extensions: 5368
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)