Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L02
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   5.0  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   8.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 783 LSSHYFDDQNMXVTDSYRTGSRCGGTSP 866
           +S+  +++QN     S R GS+ G  +P
Sbjct: 635 ISTTIYENQNCLDASSSRRGSKIGSPTP 662


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 619 PLSILGNFNHMFDAKTRHDAXKLY 690
           PLS   N+N+ ++   +H+  KLY
Sbjct: 87  PLSNNYNYNNNYNNYNKHNYNKLY 110


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 656 SNMWLKLPRMLSGPVC 609
           ++MWL +  M+SG  C
Sbjct: 351 TDMWLTMLSMISGATC 366


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 656 SNMWLKLPRMLSGPVC 609
           ++MWL +  M+SG  C
Sbjct: 319 TDMWLTMLSMISGATC 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,548
Number of Sequences: 438
Number of extensions: 5196
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)