Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P19
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.0  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 187 IYIFLIIKNYKNPLNIL*MNETVFN 113
           +Y F+++KN  N  NI    + +FN
Sbjct: 100 VYAFIVVKNDDNFRNISEKYQEIFN 124


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 820 PGXFKNPXXFPPGXPP 867
           P   + P  FPPG PP
Sbjct: 42  PRSNRGPVLFPPGPPP 57


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 892  LPVSRKPGPPFPP 930
            +PVS  P PP PP
Sbjct: 1851 IPVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,336
Number of Sequences: 438
Number of extensions: 3823
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)