Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P14
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    30   0.025
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    30   0.025
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    30   0.025
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    30   0.025
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    29   0.043
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    29   0.076
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    26   0.53 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.53 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   1.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   8.7  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 30.3 bits (65), Expect = 0.025
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = -2

Query: 397 SQKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNN 218
           S+K  S   +   N++K     R  ++  ++R  R +    R+   K + +LS +T +NN
Sbjct: 35  SRKRYSRSREREQNSYKNEREYRKYRETSKERS-RDRTERERSREPKIISSLSNNTIHNN 93

Query: 217 SYRFSH 200
           +Y++++
Sbjct: 94  NYKYNY 99



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 367 LHDNTFKYTHHRRNIKK 317
           +H+N +KY ++  N  K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 30.3 bits (65), Expect = 0.025
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = -2

Query: 397 SQKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNN 218
           S+K  S   +   N++K     R  ++  ++R  R +    R+   K + +LS +T +NN
Sbjct: 35  SRKRYSRSREREQNSYKNEREYRKYRETSKERS-RDRTERERSREPKIISSLSNNTIHNN 93

Query: 217 SYRFSH 200
           +Y++++
Sbjct: 94  NYKYNY 99



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 367 LHDNTFKYTHHRRNIKK 317
           +H+N +KY ++  N  K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 30.3 bits (65), Expect = 0.025
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = -2

Query: 397 SQKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNN 218
           S+K  S   +   N++K     R  ++  ++R  R +    R+   K + +LS +T +NN
Sbjct: 35  SRKRYSRSREREQNSYKNEREYRKYRETSKERS-RDRTERERSREPKIISSLSNNTIHNN 93

Query: 217 SYRFSH 200
           +Y++++
Sbjct: 94  NYKYNY 99



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 367 LHDNTFKYTHHRRNIKK 317
           +H+N +KY ++  N  K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 30.3 bits (65), Expect = 0.025
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = -2

Query: 397 SQKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNN 218
           S+K  S   +   N++K     R  ++  ++R  R +    R+   K + +LS +T +NN
Sbjct: 35  SRKRYSRSREREQNSYKNEREYRKYRETSKERS-RDRTERERSREPKIISSLSNNTIHNN 93

Query: 217 SYRFSH 200
           +Y++++
Sbjct: 94  NYKYNY 99



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 367 LHDNTFKYTHHRRNIKK 317
           +H+N +KY ++  N  K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 29.5 bits (63), Expect = 0.043
 Identities = 15/66 (22%), Positives = 35/66 (53%)
 Frame = -2

Query: 397 SQKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNN 218
           ++K  S   +   N++K     R  ++  ++R  R +    R+   K + +LS +T +NN
Sbjct: 34  NRKRNSRSREREQNSYKNEREYRKYRETSKERS-RDRTERERSREPKIISSLSNNTIHNN 92

Query: 217 SYRFSH 200
           +Y++++
Sbjct: 93  NYKYNY 98


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 15/66 (22%), Positives = 35/66 (53%)
 Frame = -2

Query: 397 SQKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNN 218
           ++K  S   +   N++K     R  ++  ++R  R +    R+   K + +LS +T +NN
Sbjct: 34  NRKRNSRSREREQNSYKNEREYRKYRETSKERS-RDRAERERSREPKIISSLSNNTIHNN 92

Query: 217 SYRFSH 200
           +Y++++
Sbjct: 93  NYKYNY 98


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -2

Query: 349 KYTHHRRNIKKVEEDRLLRSKNCSRRNLIK--K*VCNLSGS---TSYNNSYRFSHFDI 191
           K   + R  +K  E    RS+N + R   K  K + +LS +    +YNN+Y+  H++I
Sbjct: 281 KLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLHYNI 338


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 715 SNFSSKLGLSPVLIKTSHGSEIFFWNRWSIFR 620
           S   S + +SP  +K +  S++   N W++FR
Sbjct: 467 SELESNMQISPNELKPNDKSQVIKQNTWTVFR 498


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 360 SWSWPTVLCHFWLGF 404
           +WS+ T++C  W+ F
Sbjct: 106 NWSFGTIMCDLWVSF 120


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 217 SCCNWCC 237
           SCC WCC
Sbjct: 10  SCCCWCC 16


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = -2

Query: 352 FKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNNSYRFSH 200
           ++ T   R+  + E +R    K  S  N +       +   +YNN+Y  ++
Sbjct: 59  YRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNY 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,733
Number of Sequences: 438
Number of extensions: 4717
Number of successful extensions: 27
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)