Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P11
         (929 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      36   5e-04
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   5.2  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   5.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   9.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 18/83 (21%), Positives = 37/83 (44%)
 Frame = +2

Query: 293 NNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLILGISSPVFEAMLYGPLSNNNDIH 472
           N ++S+    + L    ++ D      G+  KAH+++L   SP F  +L      +  I 
Sbjct: 13  NYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIV 72

Query: 473 IPDIEPEIFQLILNYIYTDNVDI 541
           + D+       ++ +IY   V++
Sbjct: 73  LQDVAFSDLHALVEFIYHGEVNV 95


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 278 NENSCNNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLI 403
           +E  C N       +KK+L     + CN C   +K  A+K++
Sbjct: 49  DEGPCTNEGR---ELKKILPDALSTGCNKCNEKQKHTANKVV 87


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 278 NENSCNNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLI 403
           +E  C N       +KK+L     + CN C   +K  A+K++
Sbjct: 49  DEGPCTNEGR---ELKKILPDALSTGCNKCNEKQKHTANKVV 87


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 542 LCLHCLYRYN*VLAEIFLVLYQGYEYHY 459
           L L  L RY     E+++ LYQ  E HY
Sbjct: 220 LRLSRLVRYVSQWEEVYIPLYQQPERHY 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,295
Number of Sequences: 438
Number of extensions: 5331
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)