Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I02
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    27   0.31 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 141 SNTIYTIGN--QEPXFSXMDSKALSSAITKFSAKFCNELDKKKN 266
           +NT+Y + +  Q+  FS  D+K  +  IT F   F     KKK+
Sbjct: 357 TNTMYVLSDNFQQLLFSKYDAKKRNFFITMFDLDFLTNACKKKD 400


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 642  RGCLHSRDL*CV 607
            R CLH RDL CV
Sbjct: 1096 RLCLHHRDLPCV 1107


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 524 IEYLDSVLLKCWVELIVTLLDVYFVGYIKR 435
           ++ +D  L  C+V +  +LL+   VGY+ +
Sbjct: 280 VKSIDVYLGTCFVMVFASLLEYATVGYMAK 309


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 524 IEYLDSVLLKCWVELIVTLLDVYFVGYIKR 435
           ++ +D  L  C+V +  +LL+   VGY+ +
Sbjct: 280 VKSIDVYLGTCFVMVFASLLEYATVGYMAK 309


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 605  ICFIFNPFVY*AGGCGSV 552
            ICF   P V  A GC +V
Sbjct: 1701 ICFTMRPVVSCASGCTAV 1718


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 524 IEYLDSVLLKCWVELIVTLLDVYFVGYIKR 435
           ++ +D  L  C+V +  +LL+   VGY+ +
Sbjct: 219 VKSIDVYLGTCFVMVFASLLEYATVGYMAK 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,766
Number of Sequences: 438
Number of extensions: 4446
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)