Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_G19
(891 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC033286-1|AAH33286.1| 305|Homo sapiens SCML4 protein protein. 31 5.6
AL512592-2|CAI13630.1| 305|Homo sapiens protein ( Human DNA seq... 31 5.6
AL096816-2|CAI42849.1| 305|Homo sapiens protein ( 00197, novel ... 31 5.6
AK093571-1|BAC04198.1| 356|Homo sapiens protein ( Homo sapiens ... 31 5.6
AK074125-1|BAB84951.1| 178|Homo sapiens FLJ00197 protein protein. 31 5.6
BC117283-1|AAI17284.1| 676|Homo sapiens cancer susceptibility c... 31 7.4
BC117281-1|AAI17282.1| 676|Homo sapiens cancer susceptibility c... 31 7.4
BC057795-1|AAH57795.1| 716|Homo sapiens CASC1 protein protein. 31 7.4
BC047415-1|AAH47415.2| 676|Homo sapiens CASC1 protein protein. 31 7.4
AY423543-1|AAQ93499.1| 716|Homo sapiens lung adenoma susceptibi... 31 7.4
>BC033286-1|AAH33286.1| 305|Homo sapiens SCML4 protein protein.
Length = 305
Score = 31.1 bits (67), Expect = 5.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 219 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 338
S +E EEGR ++ TT +Y V PV R+S+ T+ S
Sbjct: 185 SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 224
>AL512592-2|CAI13630.1| 305|Homo sapiens protein ( Human DNA
sequence from clone RP11-35D6 on chromosome 6 Contains
part of a novel gene (FLJ00197). ).
Length = 305
Score = 31.1 bits (67), Expect = 5.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 219 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 338
S +E EEGR ++ TT +Y V PV R+S+ T+ S
Sbjct: 185 SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 224
>AL096816-2|CAI42849.1| 305|Homo sapiens protein ( 00197, novel SAM
domain ).).
Length = 305
Score = 31.1 bits (67), Expect = 5.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 219 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 338
S +E EEGR ++ TT +Y V PV R+S+ T+ S
Sbjct: 185 SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 224
>AK093571-1|BAC04198.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ36252 fis, clone THYMU2002109, moderately
similar to Homo sapiens Sex comb on midleg homolog 1
isoform 1. ).
Length = 356
Score = 31.1 bits (67), Expect = 5.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 219 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 338
S +E EEGR ++ TT +Y V PV R+S+ T+ S
Sbjct: 156 SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 195
>AK074125-1|BAB84951.1| 178|Homo sapiens FLJ00197 protein protein.
Length = 178
Score = 31.1 bits (67), Expect = 5.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 219 SRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 338
S +E EEGR ++ TT +Y V PV R+S+ T+ S
Sbjct: 58 SEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSAS 97
>BC117283-1|AAI17284.1| 676|Homo sapiens cancer susceptibility
candidate 1 protein.
Length = 676
Score = 30.7 bits (66), Expect = 7.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 541 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 648
WS+ NL+ +VFK R ++ +C NP +MF
Sbjct: 570 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 605
>BC117281-1|AAI17282.1| 676|Homo sapiens cancer susceptibility
candidate 1 protein.
Length = 676
Score = 30.7 bits (66), Expect = 7.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 541 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 648
WS+ NL+ +VFK R ++ +C NP +MF
Sbjct: 570 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 605
>BC057795-1|AAH57795.1| 716|Homo sapiens CASC1 protein protein.
Length = 716
Score = 30.7 bits (66), Expect = 7.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 541 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 648
WS+ NL+ +VFK R ++ +C NP +MF
Sbjct: 610 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 645
>BC047415-1|AAH47415.2| 676|Homo sapiens CASC1 protein protein.
Length = 676
Score = 30.7 bits (66), Expect = 7.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 541 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 648
WS+ NL+ +VFK R ++ +C NP +MF
Sbjct: 570 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 605
>AY423543-1|AAQ93499.1| 716|Homo sapiens lung adenoma
susceptibility 1-like protein protein.
Length = 716
Score = 30.7 bits (66), Expect = 7.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 541 WSRRNLVTEDQTLVFKQRSGMSGDCQHNPIIHRIMF 648
WS+ NL+ +VFK R ++ +C NP +MF
Sbjct: 610 WSKWNLLCNSTKVVFKVREHLTEECTENPNWALLMF 645
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,965,841
Number of Sequences: 237096
Number of extensions: 3037815
Number of successful extensions: 6083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6082
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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