Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_F08
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.73 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   2.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   2.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   2.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.8  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 545 RLSCDCILREINILD 501
           +L C+CIL+  NILD
Sbjct: 60  QLYCECILKNFNILD 74


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/48 (18%), Positives = 27/48 (56%)
 Frame = +1

Query: 43  KILMLLSLDIRETQATNMKTIICLFTIAIAAMAAVTNLSNVLKNGNDN 186
           ++  +LSL +    ++ + TI+C+ T+A+  +  +    ++ ++G  +
Sbjct: 15  RLSSVLSLSLTSLASSLIFTILCILTLAL-TLVTLVRAEDIFEDGKSD 61


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/48 (18%), Positives = 27/48 (56%)
 Frame = +1

Query: 43  KILMLLSLDIRETQATNMKTIICLFTIAIAAMAAVTNLSNVLKNGNDN 186
           ++  +LSL +    ++ + TI+C+ T+A+  +  +    ++ ++G  +
Sbjct: 15  RLSSVLSLSLTSLASSLIFTILCILTLAL-TLVTLVRAEDIFEDGKSD 61


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/48 (18%), Positives = 27/48 (56%)
 Frame = +1

Query: 43  KILMLLSLDIRETQATNMKTIICLFTIAIAAMAAVTNLSNVLKNGNDN 186
           ++  +LSL +    ++ + TI+C+ T+A+  +  +    ++ ++G  +
Sbjct: 15  RLSSVLSLSLTSLASSLIFTILCILTLAL-TLVTLVRAEDIFEDGKSD 61


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/48 (18%), Positives = 27/48 (56%)
 Frame = +1

Query: 43  KILMLLSLDIRETQATNMKTIICLFTIAIAAMAAVTNLSNVLKNGNDN 186
           ++  +LSL +    ++ + TI+C+ T+A+  +  +    ++ ++G  +
Sbjct: 15  RLSSVLSLSLTSLASSLIFTILCILTLAL-TLVTLVRAEDIFEDGKSD 61


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +3

Query: 648 YFKGAWSSKFDERLTSDRDFYVSKDKTIKVP 740
           +F+ +++++  +RLTS  + +V   K +++P
Sbjct: 78  HFESSFNAQSWQRLTSLHELHVHGCKVLRIP 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,800
Number of Sequences: 438
Number of extensions: 4366
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)