Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_F04
         (905 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017386-1|AAH17386.1|  157|Homo sapiens ribosomal protein S19 p...   188   2e-47
M81757-1|AAA89070.1|  145|Homo sapiens S19 ribosomal protein pro...   181   4e-45
BC018616-1|AAH18616.1|  145|Homo sapiens ribosomal protein S19 p...   181   4e-45
BC007615-1|AAH07615.1|  145|Homo sapiens ribosomal protein S19 p...   181   4e-45
BC000023-1|AAH00023.1|  145|Homo sapiens ribosomal protein S19 p...   181   4e-45
AF092907-1|AAD13668.1|  145|Homo sapiens ribosomal protein S19 p...   181   4e-45
AB209470-1|BAD92707.1|  249|Homo sapiens proteasome beta 2 subun...    31   5.7  

>BC017386-1|AAH17386.1|  157|Homo sapiens ribosomal protein S19
           protein.
          Length = 157

 Score =  188 bits (458), Expect = 2e-47
 Identities = 91/145 (62%), Positives = 111/145 (76%), Gaps = 1/145 (0%)
 Frame = +3

Query: 60  LSSGCQHKARCVP-VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYD 236
           LS G Q   R VP VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD
Sbjct: 2   LSPGWQRGGRTVPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYD 61

Query: 237 PDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEA 416
            +WFY R A+  RH+Y+R   GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQ+LE 
Sbjct: 62  ENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEG 121

Query: 417 LKLVEKVQDGGRILTTQGRRDLDRI 491
           LK+VEK QDGGR LT QG+RDLDRI
Sbjct: 122 LKMVEKDQDGGRKLTPQGQRDLDRI 146


>M81757-1|AAA89070.1|  145|Homo sapiens S19 ribosomal protein
           protein.
          Length = 145

 Score =  181 bits (440), Expect = 4e-45
 Identities = 84/131 (64%), Positives = 104/131 (79%)
 Frame = +3

Query: 99  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 278
           VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+  RH
Sbjct: 4   VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 63

Query: 279 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 458
           +Y+R   GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR L
Sbjct: 64  LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKL 123

Query: 459 TTQGRRDLDRI 491
           T QG+RDLDRI
Sbjct: 124 TPQGQRDLDRI 134


>BC018616-1|AAH18616.1|  145|Homo sapiens ribosomal protein S19
           protein.
          Length = 145

 Score =  181 bits (440), Expect = 4e-45
 Identities = 84/131 (64%), Positives = 104/131 (79%)
 Frame = +3

Query: 99  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 278
           VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+  RH
Sbjct: 4   VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 63

Query: 279 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 458
           +Y+R   GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR L
Sbjct: 64  LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKL 123

Query: 459 TTQGRRDLDRI 491
           T QG+RDLDRI
Sbjct: 124 TPQGQRDLDRI 134


>BC007615-1|AAH07615.1|  145|Homo sapiens ribosomal protein S19
           protein.
          Length = 145

 Score =  181 bits (440), Expect = 4e-45
 Identities = 84/131 (64%), Positives = 104/131 (79%)
 Frame = +3

Query: 99  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 278
           VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+  RH
Sbjct: 4   VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 63

Query: 279 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 458
           +Y+R   GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR L
Sbjct: 64  LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKL 123

Query: 459 TTQGRRDLDRI 491
           T QG+RDLDRI
Sbjct: 124 TPQGQRDLDRI 134


>BC000023-1|AAH00023.1|  145|Homo sapiens ribosomal protein S19
           protein.
          Length = 145

 Score =  181 bits (440), Expect = 4e-45
 Identities = 84/131 (64%), Positives = 104/131 (79%)
 Frame = +3

Query: 99  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 278
           VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+  RH
Sbjct: 4   VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 63

Query: 279 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 458
           +Y+R   GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR L
Sbjct: 64  LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKL 123

Query: 459 TTQGRRDLDRI 491
           T QG+RDLDRI
Sbjct: 124 TPQGQRDLDRI 134


>AF092907-1|AAD13668.1|  145|Homo sapiens ribosomal protein S19
           protein.
          Length = 145

 Score =  181 bits (440), Expect = 4e-45
 Identities = 84/131 (64%), Positives = 104/131 (79%)
 Frame = +3

Query: 99  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 278
           VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+  RH
Sbjct: 4   VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 63

Query: 279 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 458
           +Y+R   GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQ+LE LK+VEK QDGGR L
Sbjct: 64  LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKL 123

Query: 459 TTQGRRDLDRI 491
           T QG+RDLDRI
Sbjct: 124 TPQGQRDLDRI 134


>AB209470-1|BAD92707.1|  249|Homo sapiens proteasome beta 2 subunit
           variant protein.
          Length = 249

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +3

Query: 231 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 401
           Y P     R   +LR      P G  + T + GGR+  G   S  CR  G   R+AL
Sbjct: 179 YTPTISRERAVELLRKCLEEGPGGAGSSTALGGGRRSVGQDRSSSCRRKGRGRRRAL 235


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,274,474
Number of Sequences: 237096
Number of extensions: 2306097
Number of successful extensions: 4430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4430
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)