Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_K02
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   8.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   8.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   8.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   8.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 157 CKRSVR*RQSGKNMEQVHRR**SKNAELQRLLDRSLEEQRLQ 282
           CKR      S +N + ++ R  SKN + ++ +++  E +R Q
Sbjct: 38  CKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQ 79


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 384 FNILSEASTDTTLNPSFTSIMESIPVPQA 298
           +++ + A+  TT+ P F   + S+P+P A
Sbjct: 455 YDLGAVATVGTTVAPCFEEPLPSLPLPGA 483


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 318 SIPVPQAASKTVLQPLFFKRPIKKSL 241
           +IPVPQAA+K ++     ++P  + L
Sbjct: 55  TIPVPQAANKGMINQYGGEQPTLRLL 80


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 125 HSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKN 271
           +SRS     +  K++ +  K  +TW +   D  +R ++ +  +I  L N
Sbjct: 39  YSRSREREQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSN 87


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 125 HSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKN 271
           +SRS     +  K++ +  K  +TW +   D  +R ++ +  +I  L N
Sbjct: 39  YSRSREREQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSN 87


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 125 HSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKN 271
           +SRS     +  K++ +  K  +TW +   D  +R ++ +  +I  L N
Sbjct: 39  YSRSREREQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSN 87


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 125 HSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKN 271
           +SRS     +  K++ +  K  +TW +   D  +R ++ +  +I  L N
Sbjct: 39  YSRSREREQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSN 87


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 311 GIDSMMLVNEGFKVVSVDASDKMLK 385
           G+DS     EGF   +VD   ++L+
Sbjct: 388 GLDSQFCTVEGFITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 311 GIDSMMLVNEGFKVVSVDASDKMLK 385
           G+DS     EGF   +VD   ++L+
Sbjct: 441 GLDSQFCTVEGFITAAVDEWPRLLR 465


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 315 IPVPQAASKTVLQPL 271
           +PVPQ    T+L P+
Sbjct: 796 VPVPQVNDSTILSPV 810


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,206
Number of Sequences: 438
Number of extensions: 4640
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)