Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I02
         (975 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 810 YNFXPXPXXIXPPPXAXPXPXSA 878
           Y   P P  +  PP   P P SA
Sbjct: 281 YGHHPDPGEVDLPPETQPTPPSA 303


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 656 PXPXXXPPXKXPPXPPP 706
           P P   PP   PP  PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 674 PPXKXPPXPPP 706
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 878  PXXAXPXPPPPP 913
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,416
Number of Sequences: 438
Number of extensions: 5477
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)