Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_D08
(880 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 25 0.70
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 25 1.2
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 24 1.6
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 24 1.6
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 24 1.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 24 1.6
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 24 2.1
AB073998-1|BAC76402.1| 339|Apis mellifera preprotachykinin prot... 24 2.1
AB073995-1|BAC76399.1| 301|Apis mellifera preprotachykinin prot... 24 2.1
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 23 2.8
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 6.5
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 8.6
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 25.4 bits (53), Expect = 0.70
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 289 FSSPFSIMHASRALFVXRASTARL*FRFLDVFR-CRTI*NFNFNRFSTSVSHFSEVFSHI 113
FS F I+HA RAL + R + R L + R R + + F S F +F+ I
Sbjct: 192 FSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYFLNMASVFMRIFNLI 251
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +1
Query: 49 LVNCQYCHVSCKLKNIKLNC 108
+++C H++CK +IK C
Sbjct: 360 VLDCHTAHIACKFADIKEKC 379
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +1
Query: 49 LVNCQYCHVSCKLKNIKLNC 108
+++C H++CK IK C
Sbjct: 360 VLDCHTAHIACKFAEIKEKC 379
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 24.2 bits (50), Expect = 1.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +1
Query: 49 LVNCQYCHVSCKLKNIKLNC 108
+++C H++CK IK C
Sbjct: 71 VLDCHTAHIACKFAEIKEKC 90
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 289 FSSPFSIMHASRALFVXR 236
FS F I+HA RAL + R
Sbjct: 192 FSESFQILHAGRALRILR 209
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 289 FSSPFSIMHASRALFVXR 236
FS F I+HA RAL + R
Sbjct: 192 FSESFQILHAGRALRILR 209
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -3
Query: 614 VKFNILPIPLAFSNIYNLINQRGSHENSYKSNKQNCIF 501
VKFN + L F N+++ + G N + + +F
Sbjct: 181 VKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLF 218
>AB073998-1|BAC76402.1| 339|Apis mellifera preprotachykinin
protein.
Length = 339
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 391 STYDSIAYLSANKFQYEKNKTDLK 462
+T+D + N F YEK TD +
Sbjct: 220 TTFDDYLDYAINPFDYEKRSTDFQ 243
>AB073995-1|BAC76399.1| 301|Apis mellifera preprotachykinin
protein.
Length = 301
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 391 STYDSIAYLSANKFQYEKNKTDLK 462
+T+D + N F YEK TD +
Sbjct: 220 TTFDDYLDYAINPFDYEKRSTDFQ 243
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 201 TFSGAGPSKTLTSTALALA 145
TF G GPSK L A + A
Sbjct: 192 TFEGTGPSKKLAKAAASKA 210
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 6.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 584 AFSNIYNLINQRGSHENSYKSN 519
+ SN YN N ++ N+Y +N
Sbjct: 87 SLSNNYNYNNNYNNYNNNYNTN 108
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 135 FQRFFHIYDAIQF 97
FQ+FFH Y ++F
Sbjct: 423 FQQFFHCYCPVRF 435
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,402
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -