Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D06
         (1003 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.27 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   10.0 

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 836 PPXPAPXXPPPXPSHP 883
           PP PAP  PPP  S P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +2

Query: 812 PTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLPG 913
           P+   P   P P      P    P  P   P PG
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPG 49


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 242 GEEERSHHKCREQTDTKQQDELHGV 316
           GE   S  + RE    ++ D+LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,750
Number of Sequences: 438
Number of extensions: 3482
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)