Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B08
         (1128 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.043
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.93 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.043
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 979  PXXTTHQNKKXPGXXXPPPPPPXXXPXXPPPPPP 1080
            P  + HQ+ + P    PP P     P  PP  PP
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 27.1 bits (57), Expect = 0.30
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +1

Query: 991  THQNKKXPGXXXPPPPPPXXXPXXPPPPPPXPPXXXPPP 1107
            T Q+++       P P P   P  P    P  P   PPP
Sbjct: 10   TQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 1076 PPXPXXPPPPP 1108
            PP P  PPPPP
Sbjct: 338  PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 1054 PXXPPPPPPXPPXXXP 1101
            P  P PPPP P    P
Sbjct: 338  PPKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 1106 GGGXXXGGXGGGGGGXXGXXXG 1041
            GG    G   GGGGG  G   G
Sbjct: 36   GGSIVVGANNGGGGGGLGIASG 57



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -2

Query: 1124 GXXXXXGGGXXXGGXGGGGGGXXGXXXGGGGGG 1026
            G      GG   G    GG    G   GGGGGG
Sbjct: 21   GPGSSSAGGVVTGA--SGGSIVVGANNGGGGGG 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1063 PPPPPPXP 1086
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1066 PPPPPXPP 1089
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 997  QNKKXPGXXXPPPPPP 1044
            +N    G   PPPPPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,628
Number of Sequences: 438
Number of extensions: 12442
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38078316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)