Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_M01
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   0.68 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.3  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +1

Query: 73  LLYHLSVVLFNSYVIWYDQQYVEIPLPDGIKNMSFKARGIFLTFWCFXLQTIYFGTAVLN 252
           +++HL     +  V WY Q       P     +++   G+ + +W   +  IY  T++L 
Sbjct: 173 IVFHLET---HPNVTWYSQCVTFNAFPTYTHEITYSLFGMIMMYWFPLVVIIYTYTSILL 229

Query: 253 DI 258
           +I
Sbjct: 230 EI 231


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 452  HTTIVPFIILELLLNKQKLSNEK 520
            H ++VPF+    +LN + LS EK
Sbjct: 1035 HYSVVPFVSNHDILNLRPLSMEK 1057


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 538 HXLLILPTYFGFIT 579
           H L+ LPT F F+T
Sbjct: 326 HALITLPTIFWFLT 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,129
Number of Sequences: 438
Number of extensions: 4760
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)