Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_F17
         (931 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.11 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.32 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
 Frame = +1

Query: 781 PXPXXXXXPPPXXPXXXXPPPPXPXPXPXXPP--PPPXXP 894
           P P       P  P    PP P   P P  PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 780 PPPXXXXXXPXXXPPXXXPPPPXPXPXXPXPPPPPP 887
           P P          P    PP P   P    PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 855 PXXPXPPPPPPXXPXP 902
           P  P PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 819 PPXXXPPPPXPXPXXP 866
           PP   PPPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 849  PXPXXPXPPPPPP 887
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 695  SXXPPPPPP 721
            S  PPPPPP
Sbjct: 1856 SPEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -1

Query: 922 GGXXXXRGXGXXGGGGGGXGXXGXGXGGGGXXXG 821
           GG       G   G  GG    G   GGGG   G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -3

Query: 923 GGXAPXAXXGGXXGGGGGXXGXGXGXGGGG 834
           GG    +  G   G  GG    G   GGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGG 49



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = -3

Query: 857 GXGXGGGGXXXXGXXGGGXXXXXGXGGGG 771
           G G    G    G  GG        GGGG
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGG 49


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 168  PGXRGXPLXXGVFXAPXMXKTPGXGWXPPP 257
            PG  G  +   +   P +  TP   W PPP
Sbjct: 1139 PGPNGIKMPSFMEGMPHLPFTPFNFWNPPP 1168


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 864  PXPPPPPP 887
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.157    0.587 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,853
Number of Sequences: 438
Number of extensions: 12883
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)