Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E15
         (914 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48050.1 68415.m06014 expressed protein ; expression supporte...    29   4.3  
At2g26860.2 68415.m03223 F-box family protein contains F-box dom...    29   5.7  
At2g26860.1 68415.m03222 F-box family protein contains F-box dom...    29   5.7  
At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705...    28   9.9  
At4g28670.1 68417.m04097 protein kinase family protein contains ...    28   9.9  
At3g24880.1 68416.m03120 expressed protein                             28   9.9  
At3g24870.1 68416.m03119 expressed protein                             28   9.9  

>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = -1

Query: 347 PMVFRLFVNDQVVNYILDDGALALASHIPSSDGQHCRSS-PVRMLLYSFSSSSWLEVSAD 171
           P+V  LF +   + Y+    +   +   PS    HC     +  L + F    WL V  D
Sbjct: 472 PVVVFLFASILAIEYVATWNSFLPSDQAPSETSVHCHDCWSIAALYFKFCRECWLGVRVD 531


>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 355

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 633 KYWLYLVLWILKYTLLFSHQGNELPTDE 550
           K W +L LW+ K T + +H  ++LP  +
Sbjct: 32  KRWEFLWLWVPKLTFVMNHYESDLPIQD 59


>At2g26860.1 68415.m03222 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 405

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 633 KYWLYLVLWILKYTLLFSHQGNELPTDE 550
           K W +L LW+ K T + +H  ++LP  +
Sbjct: 32  KRWEFLWLWVPKLTFVMNHYESDLPIQD 59


>At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705:
           Eukaryotic protein of unknown function (DUF829)
          Length = 403

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 332 LFVNDQVVNYILDDGALALASHIPSSDGQHCRSSPVRMLLYSFS 201
           L  + Q +N  L D A  LAS++ S   +  ++ PV ++  SFS
Sbjct: 52  LVCHSQFLNMFLPDKAADLASNVVSELVKELKAKPVPLVFASFS 95


>At4g28670.1 68417.m04097 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 625

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 326 VNDQVVNYILDDGALALASHIPSSDG 249
           +ND++    L DGAL++ S +PS +G
Sbjct: 196 LNDELCKLCLADGALSVTSCLPSKEG 221


>At3g24880.1 68416.m03120 expressed protein
          Length = 1957

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 204  ETVQQHPHRRTTTVLSVRAWNMRSQGKGSII-QNV-VNNLIIDKETEHHGSTATSCG 368
            ++ +QHPH+R  T        ++  G+G++I QN+ V+   ++  T   G+ AT  G
Sbjct: 1626 QSARQHPHQRQPTQGQQLNKQLKGMGRGNMIHQNITVDQSHLNGLTMPQGNQATEKG 1682


>At3g24870.1 68416.m03119 expressed protein
          Length = 1841

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 204  ETVQQHPHRRTTTVLSVRAWNMRSQGKGSII-QNV-VNNLIIDKETEHHGSTATSCG 368
            ++ +QHPH+R  T        ++  G+G++I QN+ V+   ++  T   G+ AT  G
Sbjct: 1510 QSARQHPHQRQPTQGQQLNKQLKGMGRGNMIHQNITVDQSHLNGLTMPQGNQATEKG 1566


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,135
Number of Sequences: 28952
Number of extensions: 336199
Number of successful extensions: 856
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)