Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E12
         (899 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8798| Best HMM Match : SOUL (HMM E-Value=1e-22)                     34   0.18 
SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4)                  30   2.2  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   28   8.9  
SB_27919| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_8798| Best HMM Match : SOUL (HMM E-Value=1e-22)
          Length = 360

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 365 ESQKVKILNVIND-DSQTLSRFD-IAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTDKTA 538
           E+   ++L V+N  D + L +   I + R +   QW+  +G +  + DL  +EGFT K A
Sbjct: 70  ETFDAELLTVLNTGDVKELKKLQAIGEKRAQLIVQWRQLHGPLAKVQDLANVEGFTQKMA 129


>SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4)
          Length = 484

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +2

Query: 395 INDDSQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTDKTA 538
           I+DD   LS  D  ++ +K+ K+W  +NG+V ++ D  ++    DKTA
Sbjct: 39  ISDDPIVLSSAD--ENTIKR-KKWSYANGKVWSIGDQNMLNFIRDKTA 83


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 272 IVSNTKMYQKCGYRLHVFTNRNTR*NHQHIQIHACT 165
           ++ + K Y+K   ++HV T RN       IQ H CT
Sbjct: 81  VIDSIKFYEKNDIQIHVHTYRNAN-TRTRIQTHKCT 115


>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 794  INISGSDLLSFGVINTIILPLHNFIIILFISVQQTELTDIYTVNTVL 654
            INI  + ++ +  INTII+   N III  ++      T I  +NT++
Sbjct: 1394 INIIINTIIIYTTINTIIINTINTIIINTMNTIIVTTTTIIIINTII 1440


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 404  DSQTLSRFDIAKSRLKKFKQWKTSNGQV---KTLSDLPLIEGFTDKTAKKLCDSILNGP 571
            DS    +   A+ RLKKF+Q +T N      KT  + P++   TD + K    S+ + P
Sbjct: 3923 DSDRDLKLAAARKRLKKFQQKRTPNSSPSVHKTSQNSPVVS--TDSSTKSSNSSVPSSP 3979


>SB_27919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -1

Query: 797 NINISGSDLLSFGVINTIILPLHNFIIILFISVQQTELTDIYTVNTVLQSLIVLSFKFGC 618
           NIN  G  L  F   N  I+     III+ I +    +  I T+ T++  +I++      
Sbjct: 29  NINAYGKSLAEFSYSNNFIVLNVIIIIIIIIIIIIIIIIIIITIITIITIIIIIIIIIII 88

Query: 617 NIDLLFYLIFVQLL 576
            I ++  +I + +L
Sbjct: 89  IIIIIIIIIIIIIL 102


>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2905

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 497  SDLPLIEGFTDKTAKKLCDSILNGPTEEVEQ 589
            S LP+I+GF   TA+ + D++ +  TE+ E+
Sbjct: 2207 SSLPVIKGFLLFTAESMLDNLCDSLTEKTEE 2237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,872,550
Number of Sequences: 59808
Number of extensions: 456852
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)