Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E11
         (867 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   7e-18
SB_18780| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)                    30   2.1  

>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
 Frame = +1

Query: 625 SRVNFQVQYXLVFCLWVLTFNPPIG*KMNKFN-VIPILADILSDSVKEKVPRIVLXVFXN 801
           +++ FQ+QY L+F LW+L+F+P I  +M   N VIP+LADIL DS KEKV RI+     N
Sbjct: 195 NKIGFQLQYQLIFTLWLLSFDPRIAERMVGNNAVIPVLADILRDSDKEKVTRIITATLRN 254

Query: 802 LIEKPEDQQXXQXPXIAMVQ 861
           L++KPE+++  +   ++M+Q
Sbjct: 255 LLDKPEEKK--RESAVSMIQ 272



 Score = 66.1 bits (154), Expect(2) = 7e-18
 Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
 Frame = +2

Query: 71  EIRQTQINWQSYLQSQMITQRDHDFIVNLD----QRGQKDLPDKNPDACAEVFLNLLTHI 238
           E+R+  +NWQSY+  +MI+Q D+  I + D        K + D+  D  A+  L+LL  +
Sbjct: 43  EVRKQTVNWQSYVHGKMISQEDYSMIADYDCMDPVERAKIISDRG-DQLAKTCLSLLVKL 101

Query: 239 SKDHTIQYILVLIDDILS 292
           ++DHTI+YILVLIDD+L+
Sbjct: 102 TRDHTIRYILVLIDDMLN 119



 Score = 42.7 bits (96), Expect(2) = 7e-18
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = +2

Query: 410 IIAKLACWHPQLMDKSDLHFYLSWLKDQ 493
           I+AKLACW    + +SDL+F+LSWLK+Q
Sbjct: 123 IVAKLACWGNVRLPESDLNFFLSWLKNQ 150



 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 18/51 (35%), Positives = 34/51 (66%)
 Frame = +3

Query: 468 FISPGLKIKLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSIL 620
           F    LK +L +   +Y+ S+A  LQ+MLR++ Y+ AF  ++GI+++++ L
Sbjct: 142 FFLSWLKNQLTSPTCEYLHSIALSLQLMLRVESYKEAFFKLEGINSIVATL 192


>SB_18780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 565 NTALLSSLSMVYPPYCRFWASRVNFQVQYXLVFCLWVLTF 684
           +TA+ ++L +V PP CR       F  QY ++   +V+ F
Sbjct: 6   STAVAAALELVDPPGCRNSMEMYTFGTQYWMIISSYVILF 45


>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
          Length = 289

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
 Frame = +2

Query: 158 DQRGQKDLPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFS 337
           D R Q     +         + L   I+K H I Y L   D I   + +  ++  +    
Sbjct: 101 DIRNQSQYSHRQGQLITTRMMRLFDLIAKKHNISYWLTSADYIKFFEVAAKELPSDMFLQ 160

Query: 338 GNVWQPFLNLLNRQ-DEFVQHMTARIIAKLACWHPQLMDKSDLHFY 472
            ++  P+L   N+Q    + H    I  +   W+P+L DK   + Y
Sbjct: 161 NSISDPYLRPDNKQYAASITHPKVGIYQR--SWNPRLRDKKSCYKY 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,747,899
Number of Sequences: 59808
Number of extensions: 518399
Number of successful extensions: 1216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)