Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E10
(887 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 254 7e-68
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 249 3e-66
SB_56| Best HMM Match : Actin (HMM E-Value=0) 248 5e-66
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 247 1e-65
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 233 1e-61
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 2e-46
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 157 1e-38
SB_54| Best HMM Match : Actin (HMM E-Value=0) 155 5e-38
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 8e-30
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 118 5e-27
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 3e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 57 2e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 57 2e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 3e-08
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 52 6e-07
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 6e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.18
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.71
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.94
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.94
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 31 1.6
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0) 30 2.2
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 30 2.2
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 30 2.2
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 30 2.9
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 30 2.9
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54) 29 3.8
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 29 3.8
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 29 3.8
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 5.0
SB_49099| Best HMM Match : rve (HMM E-Value=2e-08) 29 5.0
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 6.6
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 29 6.6
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_43791| Best HMM Match : Hep_59 (HMM E-Value=0.54) 28 8.8
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8) 28 8.8
SB_32924| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 254 bits (622), Expect = 7e-68
Identities = 130/185 (70%), Positives = 138/185 (74%), Gaps = 2/185 (1%)
Frame = +1
Query: 130 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 309
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 310 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEGSPQPXGQQRED 489
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE P + +
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 490 DPDHVRNIQH-ARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRT-IYEGYALPHAILR 663
A +V +L R+ + H IYEGYALPHAILR
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDS--GDGVTHTVPIYEGYALPHAILR 178
Query: 664 LDLAG 678
LDLAG
Sbjct: 179 LDLAG 183
Score = 203 bits (496), Expect = 1e-52
Identities = 103/134 (76%), Positives = 106/134 (79%)
Frame = +2
Query: 425 PRNTPSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 604
P P APLNP ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Query: 605 GVSHTVPSTRDTHSPTPSCVWTWPGRDLTDYLMKILTERGXSFTTTXEREIVRDIKEKLC 784
GV+HTVP P GRDLTDYLMKILTERG SFTTT EREIVRDIKEKLC
Sbjct: 159 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 218
Query: 785 YVALDFEQEMATAA 826
YVALDFEQEM TAA
Sbjct: 219 YVALDFEQEMTTAA 232
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 249 bits (609), Expect = 3e-66
Identities = 128/185 (69%), Positives = 137/185 (74%), Gaps = 2/185 (1%)
Frame = +1
Query: 130 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 309
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 310 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEGSPQPXGQQRED 489
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE P + +
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 490 DPDHVRNIQH-ARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRT-IYEGYALPHAILR 663
A +V +L R+ + H IYEGYALPHAI+R
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDS--GDGVTHTVPIYEGYALPHAIIR 178
Query: 664 LDLAG 678
LDLAG
Sbjct: 179 LDLAG 183
Score = 203 bits (495), Expect = 2e-52
Identities = 103/134 (76%), Positives = 106/134 (79%)
Frame = +2
Query: 425 PRNTPSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 604
P P APLNP ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Query: 605 GVSHTVPSTRDTHSPTPSCVWTWPGRDLTDYLMKILTERGXSFTTTXEREIVRDIKEKLC 784
GV+HTVP P GRDLTDYLMKILTERG SFTTT EREIVRDIKEKLC
Sbjct: 159 GVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 218
Query: 785 YVALDFEQEMATAA 826
YVALDFEQEM TAA
Sbjct: 219 YVALDFEQEMETAA 232
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 248 bits (607), Expect = 5e-66
Identities = 128/183 (69%), Positives = 136/183 (74%), Gaps = 2/183 (1%)
Frame = +1
Query: 136 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 315
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 316 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEGSPQPXGQQREDDP 495
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE P + +
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 496 DHVRNIQH-ARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRT-IYEGYALPHAILRLD 669
A +V +L R+ + H IYEGYALPHAILRLD
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDS--GDGVTHTVPIYEGYALPHAILRLD 179
Query: 670 LAG 678
LAG
Sbjct: 180 LAG 182
Score = 203 bits (495), Expect = 2e-52
Identities = 103/134 (76%), Positives = 106/134 (79%)
Frame = +2
Query: 425 PRNTPSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 604
P P APLNP ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 157
Query: 605 GVSHTVPSTRDTHSPTPSCVWTWPGRDLTDYLMKILTERGXSFTTTXEREIVRDIKEKLC 784
GV+HTVP P GRDLTDYLMKILTERG SFTTT EREIVRDIKEKLC
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 217
Query: 785 YVALDFEQEMATAA 826
YVALDFEQEM TAA
Sbjct: 218 YVALDFEQEMQTAA 231
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 247 bits (604), Expect = 1e-65
Identities = 127/183 (69%), Positives = 136/183 (74%), Gaps = 2/183 (1%)
Frame = +1
Query: 136 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 315
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 316 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEGSPQPXGQQREDDP 495
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE P + +
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 496 DHVRNIQH-ARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRT-IYEGYALPHAILRLD 669
A +V +L R+ + H IYEGYALPHAILRLD
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDS--GDGVTHTVPIYEGYALPHAILRLD 179
Query: 670 LAG 678
LAG
Sbjct: 180 LAG 182
Score = 201 bits (491), Expect = 5e-52
Identities = 103/134 (76%), Positives = 106/134 (79%)
Frame = +2
Query: 425 PRNTPSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 604
P P APLNP ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 157
Query: 605 GVSHTVPSTRDTHSPTPSCVWTWPGRDLTDYLMKILTERGXSFTTTXEREIVRDIKEKLC 784
GV+HTVP P GRDLTDYLMKILTERG SFTTT EREIVRDIKEKL
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLA 217
Query: 785 YVALDFEQEMATAA 826
YVALDFEQEMATAA
Sbjct: 218 YVALDFEQEMATAA 231
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 233 bits (571), Expect = 1e-61
Identities = 104/119 (87%), Positives = 110/119 (92%)
Frame = +1
Query: 130 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 309
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 310 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEGSPQPXGQQRE 486
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE P + +
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Score = 118 bits (283), Expect(2) = 2e-42
Identities = 56/67 (83%), Positives = 58/67 (86%)
Frame = +2
Query: 425 PRNTPSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 604
P P APLNP ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Query: 605 GVSHTVP 625
GVSHTVP
Sbjct: 159 GVSHTVP 165
Score = 73.7 bits (173), Expect(2) = 2e-42
Identities = 36/48 (75%), Positives = 38/48 (79%)
Frame = +2
Query: 683 DLTDYLMKILTERGXSFTTTXEREIVRDIKEKLCYVALDFEQEMATAA 826
D + + I ERG SFTTT EREIVRDIKEKLCYVALDFEQEM TAA
Sbjct: 158 DGVSHTVPIYEERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAA 205
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 183 bits (445), Expect = 2e-46
Identities = 83/89 (93%), Positives = 86/89 (96%)
Frame = +1
Query: 136 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 315
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 316 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 402
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 177 bits (431), Expect = 1e-44
Identities = 90/117 (76%), Positives = 95/117 (81%)
Frame = +2
Query: 476 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPSTRDTHSPTP 655
N + M +IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVP P
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 656 SCVWTWPGRDLTDYLMKILTERGXSFTTTXEREIVRDIKEKLCYVALDFEQEMATAA 826
GRDLTDYLMKILTERG SFTTT EREIVRDIKEKLCYVALDFEQEM TAA
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAA 194
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 157 bits (381), Expect = 1e-38
Identities = 78/106 (73%), Positives = 84/106 (79%)
Frame = +2
Query: 497 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPSTRDTHSPTPSCVWTWP 676
IMFE FN+PA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VP P
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 677 GRDLTDYLMKILTERGXSFTTTXEREIVRDIKEKLCYVALDFEQEM 814
GRDLTDYLMK++TERG SFTTT EREIVRDIKEKLCYVALDF QE+
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 155 bits (376), Expect = 5e-38
Identities = 73/129 (56%), Positives = 92/129 (71%)
Frame = +2
Query: 437 PSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 616
P APLNP NRE+M Q+MFE+FN P MYVA+QAV++LYASGRTTG V D GDGVSH
Sbjct: 2147 PVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRTTGTVFDCGDGVSH 2206
Query: 617 TVPSTRDTHSPTPSCVWTWPGRDLTDYLMKILTERGXSFTTTXEREIVRDIKEKLCYVAL 796
TVP P + GRDLT YL +++TERG SF +T E++I+RD+KE LCY A+
Sbjct: 2207 TVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLKETLCYCAM 2266
Query: 797 DFEQEMATA 823
D+E+E+ A
Sbjct: 2267 DYERELKEA 2275
Score = 59.7 bits (138), Expect = 3e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 154 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 255
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 41.5 bits (93), Expect = 9e-04
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Frame = +1
Query: 382 KIWHHTFYNELRVAPEEHPVLLTEGSPQPXGQQREDDPDHVRNIQHARHVRRHPSRALAV 561
K+W H F ++LRV E+ PVLLTE P RE R +Q P +AV
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPK-MNRE------RMVQLMFESFNVPCMYVAV 2181
Query: 562 R--VRSYHRYR-AGLRRRC---LPHRT-IYEGYALPHAILRLDLAG 678
+ + Y R G C + H +Y+GY LPHA R+DLAG
Sbjct: 2182 QAVMALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAG 2227
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 128 bits (308), Expect = 8e-30
Identities = 64/133 (48%), Positives = 82/133 (61%)
Frame = +2
Query: 425 PRNTPSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 604
PRNT PLNP NREKM ++MFE + +Y+AIQAVL+LYA G TG+V+DSGD
Sbjct: 102 PRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGD 161
Query: 605 GVSHTVPSTRDTHSPTPSCVWTWPGRDLTDYLMKILTERGXSFTTTXEREIVRDIKEKLC 784
GV+H P P + GRD+T YL+K++ RG +F T + E VR +KEKLC
Sbjct: 162 GVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLC 221
Query: 785 YVALDFEQEMATA 823
YV + EQE A
Sbjct: 222 YVGYNIEQEQKLA 234
Score = 102 bits (244), Expect = 4e-22
Identities = 64/181 (35%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Frame = +1
Query: 148 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 321
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 322 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEGSPQPXGQQREDDPD 498
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE P + +
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 499 HVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPH-RTIYEGYALPHAILRLDLA 675
N Q V L + + + H +YEG+ALPH RLD+A
Sbjct: 127 MFENYQF-EGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIA 185
Query: 676 G 678
G
Sbjct: 186 G 186
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 118 bits (285), Expect = 5e-27
Identities = 58/114 (50%), Positives = 76/114 (66%)
Frame = +2
Query: 437 PSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 616
P APLNP NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGVSH
Sbjct: 128 PVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGVSH 187
Query: 617 TVPSTRDTHSPTPSCVWTWPGRDLTDYLMKILTERGXSFTTTXEREIVRDIKEK 778
+VP P GRD++ YL +L + G F ++ E EIVR IKE+
Sbjct: 188 SVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 3e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 139 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 255
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +1
Query: 124 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 294
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 295 GDEAQSKRGILTL 333
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
Score = 51.6 bits (118), Expect = 8e-07
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Frame = +2
Query: 542 QAVLSLYASGRTTGIVLDSGDGVSHT-VPSTRDTHSPTPSCVWTWPGRDLTDYLMKILTE 718
Q LSLYASG T G+ L SG + V T + T + G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIG-GHHLTENLKQYLRD 825
Query: 719 -RGXSFTTTXEREIVRDIKEKLCYVALDFEQEM 814
RG +FT++ +IV DIKEK+CY++ D +E+
Sbjct: 826 QRGHNFTSSSGWQIVNDIKEKICYLSKDHLKEV 858
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +2
Query: 437 PSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 616
P A N REK+T++MFE +N PA ++ +VL+ +A+GR+ G+V+DSG +
Sbjct: 35 PLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLTAFANGRSNGLVIDSGATQTS 94
Query: 617 TVP 625
VP
Sbjct: 95 AVP 97
Score = 32.7 bits (71), Expect = 0.41
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 340 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEGS 459
PI+ G++ +WD EKI + + ++ HP+L++E +
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAA 42
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 3e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +1
Query: 268 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 447
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 578 TGIVLDSGDGVSHTVP 625
TG V+DSGDGV+H +P
Sbjct: 356 TGCVIDSGDGVTHVIP 371
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 52.0 bits (119), Expect = 6e-07
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = +2
Query: 509 TFNTPAMYVAIQAVLSLYASGRT-TGIVLDSGDGVSHTVPSTRDTHSPTPSCVWTWP--G 679
++ T A+ + S RT TG V+DSGDGV+H +P SC+ P G
Sbjct: 38 SYATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGY--VIGSCIKHIPIAG 95
Query: 680 RDLTDYLMKILTERGXSFTTTXEREIVRDIKEKLCYVALDFEQEMA 817
RD+T ++ ++L ER E + IKE+ Y+ D +E A
Sbjct: 96 RDITFFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFA 141
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 6e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +1
Query: 142 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 321
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 322 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 411
L Y P + G + NWD ++IW +TF E
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = -3
Query: 252 MAGPSDDRGEYGARSIISCETGLAHTGAIVYYQRGNFLV 136
MA +DD GE G+ SI+S ETGLAHTGAI+ Q + +V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 33.9 bits (74), Expect = 0.18
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 42 AHLLRCARTVRIRIYVPTCHLFNNTIL 122
AHL RC +RIR+++PTC + T+L
Sbjct: 1470 AHLRRCRYLLRIRVHLPTCSHLSRTLL 1496
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 31.9 bits (69), Expect = 0.71
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +3
Query: 501 CSKHSTRPPCTSPSKPCSR----CTRPVVPPVSCWTPATVSPTPY 623
C+K T PCT PC+ CT+ +P +TP T TPY
Sbjct: 761 CTKRYT--PCTERYTPCTERYTPCTKRYIPFAKRYTPCTERYTPY 803
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.94
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 227 GNTARGASSPAKPALHIPEPLSTT 156
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 473 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 589
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 31.5 bits (68), Expect = 0.94
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 504 SKHSTRPPCTSPSKPCSRC--TRPVVPPVSCWTPATVSPTPYHLRGIRTPPRHPASG 668
S +S P TSP+ P + P + PV+C T T++ R + PP P G
Sbjct: 179 SPNSQAPTTTSPTSPTPLLPPSAPPIQPVACPTSPTIASPTKLKRELPHPPASPRKG 235
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.94
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 227 GNTARGASSPAKPALHIPEPLSTT 156
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 510 HSTRP-PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTP 620
H+T P P T PS P C + P C+T T+SP P
Sbjct: 665 HTTHPSPATHPS-PSQPCPATHLSPKPCFTFVTLSPKP 701
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 227 GNTARGASSPAKPALHIPEPLSTT 156
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)
Length = 727
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 359 TIPCSMGYLRVRIPLLLCASSPTYESFCPIPTITP 255
T P S+ RVR L L S+P Y S CP +TP
Sbjct: 592 TCPRSIVTPRVRARLSLHVSAPDYHSTCPRSIVTP 626
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 341 GYLRVRIPLLLCASSPTYESFCPIPTITP*WRGLPTI 231
G L +P A+SP Y S P+PT TP PTI
Sbjct: 1210 GALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTI 1246
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 30.3 bits (65), Expect = 2.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 537 PSKPCSRCTRPVVPP 581
P++PCS CT+P +PP
Sbjct: 220 PTEPCSLCTKPALPP 234
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 522 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYHLRGIRTPPRHPA 662
PP +P+ P P PP PA P P L PP PA
Sbjct: 57 PPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPP-PLPAPPPPPAQPA 102
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +2
Query: 479 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 589
+E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 543 KEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 579
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 536 AIQAVLSLYASGRTTGIVLDSGDGVSHTVPSTRDTHSPTP 655
AIQ V A RTTGI LD G + T+ H+PTP
Sbjct: 209 AIQIVYDHQAKERTTGIELD-GRRIRVDYSVTKRAHTPTP 247
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 522 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYHL 629
P +P+KP + P P + TP T +PT + L
Sbjct: 117 PTAHTPTKPTPKTPTPTTPTPTAHTPTTPTPTTFIL 152
>SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)
Length = 367
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/99 (24%), Positives = 42/99 (42%)
Frame = +1
Query: 400 FYNELRVAPEEHPVLLTEGSPQPXGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYH 579
F E R +E + E + Q + + DH + I+ V RH L R R+ H
Sbjct: 245 FLREKRGYQKESDSKIQEMAKQATQEAKHCLDDHTQKIKEENKVLRHELLMLIRRTRALH 304
Query: 580 RYRAGLRRRCLPHRTIYEGYALPHAILRLDLAGSRSHRL 696
+R L+ + H+ + + + L+G+R +RL
Sbjct: 305 EHREELQAQ---HKALLREVQYGRDLKK--LSGTRQNRL 338
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 341 GYLRVRIPLLLCASSPTYESFCPIPTITP*WRGLPT 234
G + +++ LLL +SSP + S PI TP +GL T
Sbjct: 275 GVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 457 SPQPXGQQREDDPDHVRNIQHARHVRRHPSR 549
SP P R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 504 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSP--TPYHLRGIRTPPRHP 659
S S PP ++PS T PPVS TP+ P TP H + TP P
Sbjct: 376 STPSNTPPVSTPSHTPPVSTPSHTPPVS--TPSHTPPVSTPSHTPPVSTPSHTP 427
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 504 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSP--TPYHLRGIRTPPRHP 659
S S PP ++PS T PPVS TP+ P TP H + TP P
Sbjct: 403 STPSHTPPVSTPSHTPPVSTPSHTPPVS--TPSNTPPVSTPSHTPPVSTPSHTP 454
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 504 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSP--TPYHLRGIRTPPRHP 659
S S PP ++PS T PPVS TP+ P TP H + TP P
Sbjct: 430 STPSNTPPVSTPSHTPPVSTPSHTPPVS--TPSHTPPVSTPSHTPPVSTPSHTP 481
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 504 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSP--TPYHLRGIRTPPRHP 659
S S PP ++PS T PPVS TP+ P TP H + TP P
Sbjct: 421 STPSHTPPVSTPSNTPPVSTPSHTPPVS--TPSHTPPVSTPSHTPPVSTPSHTP 472
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 504 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSP--TPYHLRGIRTPPRHP 659
S S PP ++PS T PPVS TP+ P TP H + TP P
Sbjct: 385 STPSHTPPVSTPSHTPPVSTPSHTPPVS--TPSHTPPVSTPSHTPPVSTPSNTP 436
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 504 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSP--TPYHLRGIRTPPRHP 659
S S PP ++PS T PPVS TP+ P TP H + TP P
Sbjct: 412 STPSHTPPVSTPSHTPPVSTPSNTPPVS--TPSHTPPVSTPSHTPPVSTPSHTP 463
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 504 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSP--TPYHLRGIRTPPRHP 659
S S PP ++PS T PPVS TP+ P TP H + TP P
Sbjct: 439 STPSHTPPVSTPSHTPPVSTPSHTPPVS--TPSHTPPVSTPSHTPPVSTPSNTP 490
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 504 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSP--TPYHLRGIRTPPRHP 659
S S PP ++PS T PPVS TP+ P TP H + TP P
Sbjct: 457 STPSHTPPVSTPSHTPPVSTPSHTPPVS--TPSNTPPVFTPSHTPPVFTPSHTP 508
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 HSTRPPCTSPSKPCSRCT-RPVVPPVSCWTPATVSPTPYHLRGIRTP 647
+S P SPS P RP PP+ P + TP HL+ P
Sbjct: 582 YSPSSPSYSPSSPSFHHNLRPTPPPLPLSIPLLLQATPPHLQSTAQP 628
>SB_49099| Best HMM Match : rve (HMM E-Value=2e-08)
Length = 553
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 591 WTPATVSPTPYHLRGIR--TPPRHPA 662
W PA +SPTP +R I+ PPR+ A
Sbjct: 238 WLPAGISPTPEKVRAIKDAEPPRNVA 263
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +3
Query: 522 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYHLRGIRTPP 650
PP P P + TRP VP +T PTP PP
Sbjct: 919 PPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPPPPTSALPPP 961
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 775 EAVLRRSRLRAGDGHRCIQQLPRXSLTNFPKXQVIT 882
E LR +RA + R Q P+ SLT PK T
Sbjct: 423 EEALRNRHMRAAERCRATQARPKESLTKLPKGTATT 458
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 531 TSPSKPCSRCTRPVVPPVSCWTPATVSPTP 620
T+P+ P + T P P + TP T + TP
Sbjct: 130 TTPTTPTTAPTTPTTPTTAATTPTTAATTP 159
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 531 TSPSKPCSRCTRPVVPPVSCWTPATVSPTP 620
+SP KP T+PVVP P+ + P P
Sbjct: 1511 SSPPKPVKPSTKPVVPVKPVKPPSPIKPKP 1540
>SB_43791| Best HMM Match : Hep_59 (HMM E-Value=0.54)
Length = 214
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 811 LLLEVESDVAQLLLDITNDFPLXGGSERXXALGEDLHEVVCE-IATR 674
L+LEV+ + + L D+ ND+PL G + +D+ C+ IAT+
Sbjct: 34 LILEVDLEYPKSLYDLHNDYPLAAGKVN---VSKDMLSEYCDKIATK 77
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 476 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP--STRDTHS 646
NR + +++ E + ++ + +L+LY RT D+ + HT P + R+ H+
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTPGNNKRECHA 495
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 227 GNTARGASSPAKPALHIPEPLSTT 156
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 227 GNTARGASSPAKPALHIPEPLSTT 156
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)
Length = 653
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 413 CVSPPRNTPSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 568
C+ +PS +RA L +T+ +FE P+ V I+A+L +Y+S
Sbjct: 446 CIRALLQSPSVCIRALLQSLGTYSSITRYVFEHNYNPS--VRIRALLGMYSS 495
>SB_32924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +2
Query: 392 IIPSTMSCVSPPRNTPSCSLRAPLNPXANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 571
++P +S S PR P + R P NR+K Q T ++ A + L+ G
Sbjct: 310 VVPMPLSSSSQPRILPRLTARMDQGPRKNRDKQKQNGDVDELTADVFEEAMAEIQLFQGG 369
Query: 572 R 574
+
Sbjct: 370 K 370
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,316,412
Number of Sequences: 59808
Number of extensions: 777900
Number of successful extensions: 2910
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 2412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2878
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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