Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E09
         (880 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)                    112   4e-25
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)
          Length = 522

 Score =  112 bits (269), Expect = 4e-25
 Identities = 55/144 (38%), Positives = 78/144 (54%)
 Frame = +2

Query: 125 KPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRGYFHVMPDFSRA 304
           KPGKV+KV A  RTG  NF+T +R  L ++YG++ VG+GG F++  G+  FH+MP+FS+ 
Sbjct: 380 KPGKVLKVEASKRTGDENFVTCMRLALGSYYGNRAVGIGGTFMIAKGKANFHIMPEFSKT 439

Query: 305 PLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXXRVQXXXXXXXXXXXXXXXXXXXXD 484
           PL S   V++WL ++++ AP                RV+                    D
Sbjct: 440 PLNSPEEVNNWLKFYDMSAPLVCLGVLESYDPGLDLRVE----HFHGYNNHGEGGHYHYD 495

Query: 485 TTPEDVHYEGYFTVASSLIRVDPP 556
           TTP +V Y GYFT A  L R+D P
Sbjct: 496 TTPNEVEYVGYFTPAERLYRMDRP 519


>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -1

Query: 235  THDFVSVVSLQCLSDGR---DKVGLARAVLRDHFNYLSGFPFRQQLVSEQRSSCSSF 74
            TH F ++V+ +C++ G+    + G+A   LR   + L G  +R Q  +++ S  S F
Sbjct: 853  THLFCAIVAAKCMTSGQLGMRRFGVALYELRYQLDILDGVVYRAQ-ANKRNSYASGF 908


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,212
Number of Sequences: 59808
Number of extensions: 243791
Number of successful extensions: 852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)