Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E09
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    28   7.2  
At5g28463.1 68418.m03457 hypothetical protein                          28   9.5  
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    28   9.5  

>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 140 IKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVL 256
           I+ + KN   +  FITS    LK H  +KV   GG  V+
Sbjct: 420 IEDMIKNHQKRQRFITSNINDLKKHQTNKVTAFGGDRVI 458


>At5g28463.1 68418.m03457 hypothetical protein
          Length = 131

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 197 ETLKTHYGDKVVGL---GGAFVLRAGRGYFHVMPDFSRAPLCSDAAVDSWLHYF 349
           E LK   GDK V     G   + RAGR  F  +     +PL  D++V  W+ YF
Sbjct: 62  EDLKLGGGDKSVAEHSHGVMTIRRAGRPVFSWLFLVLLSPLLVDSSVPWWMFYF 115


>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 491 PEDVHYEGYFTVASSLIRVDPPV 559
           P+D + +GYF   S+ +R+ PP+
Sbjct: 846 PQDSYLQGYFNNISTYLRIGPPL 868


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,683,457
Number of Sequences: 28952
Number of extensions: 180173
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)