Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E08
         (891 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   3e-16
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        33   0.31 
SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12)                  29   3.8  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.7  
SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.7  
SB_7457| Best HMM Match : DUF161 (HMM E-Value=7.4)                     28   8.8  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 47/112 (41%), Positives = 58/112 (51%)
 Frame = +1

Query: 139 MVSKAXXACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLI 318
           M S +  ACV SALIL D  VA+T  +I T++KAA + V P+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 319 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
             + +G                                   SDDDMGFGLFD
Sbjct: 61  --LSAGAPGAGGAVAAAPAAGGEAKAEEKKEEAKKEESEEESDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 318 DQVTDIDAFQGFGEQTWPIWRYSYSRRFQDGGN 220
           DQ+  I+ F+  G++ WP +    S R + GG+
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGS 134


>SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12)
          Length = 854

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 34  LPSYFQCGSLCCQXSNVLVLSCRSGLR-QLARSXLKMVSKAXXACVXSALILVDAAVAVT 210
           LP   +   L CQ    +      G+R ++  + L  + +A  A   SA++ V  AVAV 
Sbjct: 343 LPPDSKTTPLDCQNQFFITNLPADGVRNEIGEALLMRIQRAHRAATHSAVV-VAVAVAVA 401

Query: 211 GAQISTILKAAAVAVA 258
              +  ++ A AVAVA
Sbjct: 402 VVVVVVVVVAVAVAVA 417


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 442 SDDDMGFGLFD 474
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 286 LWRTDLANMALQLQPPLSRWWKFAHQ 209
           LW TDL + + Q QPP  R W  AHQ
Sbjct: 116 LWHTDLLS-SRQRQPPPERNWYQAHQ 140


>SB_7457| Best HMM Match : DUF161 (HMM E-Value=7.4)
          Length = 142

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 187 VDAAVAVTGAQISTILKAAAVAVA 258
           VD AVAV GA +  +  A AVAVA
Sbjct: 25  VDVAVAVAGAAVVAVAVAVAVAVA 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,372
Number of Sequences: 59808
Number of extensions: 216697
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)