Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E08
         (891 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    71   8e-13
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    71   8e-13
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       66   2e-11
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    66   3e-11
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    66   3e-11
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     65   7e-11
At5g42960.1 68418.m05239 expressed protein                             29   4.1  
At5g15210.1 68418.m01782 zinc finger homeobox family protein / Z...    28   9.6  

>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 38/105 (36%), Positives = 51/105 (48%)
 Frame = +1

Query: 160 ACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLITNIGSGV 339
           AC  + +IL D  +A+T  +I+T++KAA V++  YWP LFAK  E  NV DLI N+G+G 
Sbjct: 8   ACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGG 67

Query: 340 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
                                             SD D+GFGLFD
Sbjct: 68  GGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 38/105 (36%), Positives = 51/105 (48%)
 Frame = +1

Query: 160 ACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLITNIGSGV 339
           AC  + +IL D  +A+T  +I+T++KAA V++  YWP LFAK  E  NV DLI N+G+G 
Sbjct: 8   ACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGG 67

Query: 340 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
                                             SD D+GFGLFD
Sbjct: 68  GGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
 Frame = +1

Query: 160 ACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLITNIGS-G 336
           AC  + +IL D  +A+T  +I+T++KAA V +  YWP LFAK  E  NV DLI N+G+ G
Sbjct: 8   ACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGAGG 67

Query: 337 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
                                              SD D+GFGLFD
Sbjct: 68  GGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113


>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
 Frame = +1

Query: 160 ACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLITNIGS-G 336
           AC  + +IL D  +A+T  +I+T++KAA V +  YWP LFAK  E  NV DLI N+G+ G
Sbjct: 8   ACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAGG 67

Query: 337 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
                                              SD D+GFGLFD
Sbjct: 68  GGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
 Frame = +1

Query: 160 ACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLITNIGS-G 336
           AC  + +IL D  +A+T  +I+T++KAA V +  YWP LFAK  E  NV DLI N+G+ G
Sbjct: 8   ACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAGG 67

Query: 337 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
                                              SD D+GFGLFD
Sbjct: 68  GGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 38/111 (34%), Positives = 49/111 (44%)
 Frame = +1

Query: 142 VSKAXXACVXSALILVDAAVAVTGAQISTILKAAAVAVAPYWPGLFAKALEGINVRDLIT 321
           +S +  AC  +ALIL D  + +T   IS ++K A V V  YWP LFAK  E  N+ DLI 
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 322 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 474
           N+G+G                                   S+DDM  GLFD
Sbjct: 61  NVGAGGCGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIGLFD 111


>At5g42960.1 68418.m05239 expressed protein
          Length = 213

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 261 WRYSYSRRFQDGGNLRTSYGNSS 193
           W ++ SRRF  G N+R +Y  SS
Sbjct: 148 WDFAVSRRFYSGDNVRATYQTSS 170


>At5g15210.1 68418.m01782 zinc finger homeobox family protein /
           ZF-HD homeobox family protein various predicted
           proteins, Arabidopsis thaliana
          Length = 271

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +3

Query: 183 PGGCCCCRNWC-ANFHHLESGGCSCSAILARSVRQSLGRHQCP*PDHQH 326
           P    C    C  NFH  E    S SAI+     +   RHQ P P   H
Sbjct: 89  PASLTCAACGCHRNFHRREEDPSSLSAIVPAIEFRPHNRHQLPPPPPPH 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,735,349
Number of Sequences: 28952
Number of extensions: 156850
Number of successful extensions: 475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)