Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E06
         (912 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQK5 Cluster: Cytochrome c oxidase polypeptide VIIC; ...    75   2e-12
UniRef50_Q1W2C6 Cluster: Putative mitochondrial cytochrome c oxi...    67   7e-10
UniRef50_Q7JW00 Cluster: LD14731p; n=7; Arthropoda|Rep: LD14731p...    58   4e-07
UniRef50_UPI00005189A2 Cluster: PREDICTED: hypothetical protein;...    55   2e-06
UniRef50_P15954 Cluster: Cytochrome c oxidase subunit 7C, mitoch...    47   8e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    42   0.017
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.1  
UniRef50_Q9HAA0 Cluster: CDNA FLJ11939 fis, clone HEMBB1000592; ...    34   5.8  
UniRef50_Q14M86 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  

>UniRef50_Q1HQK5 Cluster: Cytochrome c oxidase polypeptide VIIC;
           n=4; Endopterygota|Rep: Cytochrome c oxidase polypeptide
           VIIC - Aedes aegypti (Yellowfever mosquito)
          Length = 67

 Score = 75.4 bits (177), Expect = 2e-12
 Identities = 33/55 (60%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
 Frame = +1

Query: 142 LGRNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRH 303
           + R  +TN VR +HS+GGIPGENLPF + NRYKLT  FI++ GSGL AP+ + RH
Sbjct: 8   ISRTGMTNLVRYSHSHGGIPGENLPFSLTNRYKLTALFIVFLGSGLGAPFFVLRH 62


>UniRef50_Q1W2C6 Cluster: Putative mitochondrial cytochrome c
           oxidase polypeptide VIIc; n=1; Graphocephala
           atropunctata|Rep: Putative mitochondrial cytochrome c
           oxidase polypeptide VIIc - Graphocephala atropunctata
          Length = 65

 Score = 66.9 bits (156), Expect = 7e-10
 Identities = 27/52 (51%), Positives = 37/52 (71%)
 Frame = +1

Query: 148 RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRH 303
           RN+ T+  R    GGIPG NLPF + N++KLT  F++Y GSG+S P+L+ RH
Sbjct: 10  RNLSTSLARRSQPGGIPGVNLPFSLDNKFKLTALFVVYFGSGMSVPFLMLRH 61


>UniRef50_Q7JW00 Cluster: LD14731p; n=7; Arthropoda|Rep: LD14731p -
           Drosophila melanogaster (Fruit fly)
          Length = 66

 Score = 57.6 bits (133), Expect = 4e-07
 Identities = 24/57 (42%), Positives = 36/57 (63%)
 Frame = +1

Query: 133 SNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRH 303
           S+ + RN   + VR   +GG+PGENLPF + N+Y++T  F +    G  +P+LI RH
Sbjct: 5   SSVIARNFSQSMVRFSGHGGVPGENLPFGLTNKYRITALFTIGCVLGFGSPFLIVRH 61


>UniRef50_UPI00005189A2 Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 71

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 24/43 (55%), Positives = 30/43 (69%)
 Frame = +1

Query: 175 NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRH 303
           +H   G PG NLP +I NRY LT  FIL+ GSGLS P+L+ R+
Sbjct: 25  DHGPEGYPGANLPINIQNRYVLTATFILFFGSGLSLPFLVLRY 67


>UniRef50_P15954 Cluster: Cytochrome c oxidase subunit 7C,
           mitochondrial precursor; n=46; Deuterostomia|Rep:
           Cytochrome c oxidase subunit 7C, mitochondrial precursor
           - Homo sapiens (Human)
          Length = 63

 Score = 46.8 bits (106), Expect = 8e-04
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 148 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRH 303
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RH
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRH 58


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.3 bits (95), Expect = 0.017
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +3

Query: 504 DPXMIRYIDEFGQTTTRMQ 560
           DP MIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 633 QVNNNNCIHFMFQVQGEVWXVFSALMNRPTXGERXFAYW 749
           ++ + NC+    +       V +ALMNRPT GER FAYW
Sbjct: 3   ELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_Q9HAA0 Cluster: CDNA FLJ11939 fis, clone HEMBB1000592;
           n=1; Homo sapiens|Rep: CDNA FLJ11939 fis, clone
           HEMBB1000592 - Homo sapiens (Human)
          Length = 201

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = -2

Query: 803 PXPNDRAQRXSEXGSGRGPIRKPPFPXRWPIH*CRKNXPHLPLNLKHK 660
           P P     R S       P    PFP RWP+H C    P L  +  HK
Sbjct: 109 PQPPSLNSRGSIAPGHPSPAPALPFPQRWPLHLCSDLSPSLCPSFSHK 156


>UniRef50_Q14M86 Cluster: Putative uncharacterized protein; n=1;
           Spiroplasma citri|Rep: Putative uncharacterized protein
           - Spiroplasma citri
          Length = 326

 Score = 33.5 bits (73), Expect = 7.7
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 680 PLNLKHKMNAIVVVNLFIAAYNGYX*S-NSITNFTNKAFFSLHSSCGLSKLINVSYHVWI 504
           P+NL H  +  V  N+ I  Y+GY  +  SI   T     +L  +  +SK  N+ Y+ ++
Sbjct: 138 PVNLPHLSDFKVNDNIIIGQYHGYNFNFGSINQATTTVVDNLQPNL-ISKPYNLQYYCYL 196

Query: 503 XLTLT 489
            LT+T
Sbjct: 197 FLTIT 201


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.5 bits (73), Expect = 7.7
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -2

Query: 662 KMNAIVVVNLFIAAYNGYX*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIXL 498
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,909,723
Number of Sequences: 1657284
Number of extensions: 12326003
Number of successful extensions: 24064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24061
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83211448033
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)