Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E04
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       31   1.6  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               29   5.0  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             28   8.8  
SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)            28   8.8  

>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 497 KDVLKITFPLKQKQPEDSQRPVAEPTETTSTNVSREEMEFTTE 625
           K   K   P ++++ E+ +RP  +PT+   T + R   E  T+
Sbjct: 427 KKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTK 469



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 494 EKDVLKITFPL-KQKQPEDSQRPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETA 664
           E+   K T PL  + +PE+ +R    PT+   T + R   E  T+   + +   +E+A
Sbjct: 343 ERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTIKRRPTERPTKKPTKPLLPEVESA 400


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 533  KQPEDSQRPVAEPTETTSTNVSREEMEFT-TESNVRDVDVGLETAXKTNEIAKAVEAXXY 709
            K+P D Q+P AEP++    NV+    + T  +   ++     +   K  E  KA E   +
Sbjct: 1992 KKPSDEQKPKAEPSKQRQGNVTANVAKITKAQDQPKERSAPTKETVKPKEEEKAEEKGIF 2051

Query: 710  A 712
            +
Sbjct: 2052 S 2052


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 524 LKQKQPEDSQRPVAEPTETTSTNVSRE 604
           ++Q Q + S+RP   P ETTS N+ ++
Sbjct: 182 IEQSQADRSKRPYDPPVETTSNNMRKK 208


>SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)
          Length = 347

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 524 LKQKQPEDSQRPVAEPTETTSTNVSRE 604
           ++Q Q + S+RP   P ETTS N+ ++
Sbjct: 170 IEQSQADRSKRPYDPPVETTSNNMRKK 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,145,154
Number of Sequences: 59808
Number of extensions: 489803
Number of successful extensions: 1852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1818
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)