Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_E04
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22060.1 68414.m02759 expressed protein                             31   1.0  
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    31   1.4  
At3g12200.1 68416.m01521 protein kinase family protein contains ...    29   3.1  
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    29   3.1  
At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak...    29   5.4  
At3g18370.1 68416.m02336 C2 domain-containing protein contains P...    29   5.4  
At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5) (A...    29   5.4  
At5g57230.1 68418.m07150 expressed protein                             28   9.5  
At5g55540.1 68418.m06919 expressed protein                             28   9.5  
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    28   9.5  
At3g42800.1 68416.m04480 expressed protein hypothetical proteins...    28   9.5  

>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 203  ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINE 313
            E MLDT   +S++  E++ + +   +LSLKF  +  E
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGE 1968


>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
           putative ATP-dependent helicases
          Length = 1058

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
 Frame = +2

Query: 320 VEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGSWVYEK 499
           + G+   + +   G   +D+    K+      ++S F+ Y+K + L  D       + + 
Sbjct: 20  INGESTTVQVSSDG-TIRDLKKALKSCFPPASSSSNFHLYIKGEKLKLDTRVAAITINDG 78

Query: 500 DVLKITFPLKQKQPEDSQRP-VAEPTETTS-TNVSREE 607
           D+L + FP K+K+   + +P +++P+  +S T+  ++E
Sbjct: 79  DILGL-FPFKKKELRQTPKPDLSKPSSLSSRTSTMKDE 115


>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +2

Query: 500 DVLKITFPLKQKQPEDSQRP--VAEPTETTST-NVSREEME--FTTESNVRDVDVGLETA 664
           D LKI+    QK  E    P      TET +  N   +E E  F+ ES +RDVDVG+ +A
Sbjct: 369 DTLKISEFTSQKSDESLIDPDIAVYSTETPAEENALPKETENIFSEESQLRDVDVGVVSA 428


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/79 (15%), Positives = 40/79 (50%)
 Frame = +2

Query: 185 FSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGY 364
           F+P + E    T  + + L    ++++ +    ++    ++ + + + D Y++   +PG 
Sbjct: 88  FTPTLNEFFPPT--IGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGL 145

Query: 365 EQKDINVKAKNGVLMVQAN 421
            ++D+ +   +G+L ++ +
Sbjct: 146 TKEDVKITVNDGILTIKGD 164


>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
           similarity to neuroendocrine-specific protein C [Homo
           sapiens] GI:307311; identical to cDNA RTNLB11
           GI:32331878
          Length = 200

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 753 IWNRQELRIVSDVTAYXXASTAFAISLVXWAVSKPTSTSRTLLSVVNSISSRLTF 589
           +W    L I SD+T          +SLV WA+S   +   +L  V   +   L+F
Sbjct: 106 VWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSF 160


>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 815

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 245 NEMQHLDNMMKELSLKFPSIINEGRVEG 328
           N+   L N MK++ +KF ++I++G +EG
Sbjct: 735 NKALLLSNQMKQVMIKFQNLIDDGDLEG 762


>At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5)
           (ABA3) identical to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262;
           supporting cDNA gi|15407261|gb|AY034895.1|
          Length = 819

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 591 FVEVVSVGSATGLWLSSGCFCFSGKVIFNTSFS*TQLPSEFTSQGRFC 448
           ++EV  + S +G+ L +GCFC  G        S ++L S     G  C
Sbjct: 410 YLEVEKLASLSGIQLRTGCFCNPGACAKYLELSHSELRSN-VEAGHIC 456


>At5g57230.1 68418.m07150 expressed protein 
          Length = 160

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 242 ANEMQHLDNMMKELSLKFPSIINEGRVEGDKY 337
           +N  QHLD M++E + +F   I   RVE  KY
Sbjct: 60  SNYTQHLDRMLEEAAAEFYPNIKFMRVECPKY 91


>At5g55540.1 68418.m06919 expressed protein
          Length = 1380

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 263 DNMMKELSLKFPSIINEGRVEGDKYQISIH 352
           D    + SL  PSI+ EGR +  K+QI+ H
Sbjct: 866 DPSSPDSSLLVPSILEEGRGKTQKWQINTH 895


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 295 PQHYKRRTR-GRRQVSDIYSPAWLRTERHQRESEKWSADGA 414
           PQ Y+   R GR+   ++    W+ T+  +  S+ W +D A
Sbjct: 140 PQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAA 180


>At3g42800.1 68416.m04480 expressed protein hypothetical proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 341

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 654 KPTSTSRTLLSVVNSI-SSRLTFVEVVSVGSATGLWLSSGCFCFS 523
           +P S    L S +NSI  S    V++ SVG  T +  SS   CFS
Sbjct: 155 QPVSPGARLTSFLNSIFQSNAKKVKLCSVGKTTDVKSSSSKSCFS 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,370,351
Number of Sequences: 28952
Number of extensions: 347764
Number of successful extensions: 1421
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)