Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_E02
(1327 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 38 0.024
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.22
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 34 0.22
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 32 0.90
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.8
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 29 8.3
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 37.5 bits (83), Expect = 0.024
Identities = 28/110 (25%), Positives = 30/110 (27%)
Frame = +2
Query: 692 PPXPPI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLXPRTSRXXXPXX 871
PP PP P P P + P P A G P P+ P T P
Sbjct: 110 PPPPPRAPETPSQAPSPPPPPTSPATRAPPPPPPIAPATGGPPPPPPIAPATGGPPPPPP 169
Query: 872 XXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPXXP 1021
A P PP G P P P PP P P
Sbjct: 170 IAPAATVPAPAVPLAAASPPPPSGGPPPPPPPPPPPPPPPILELAAPPPP 219
Score = 30.3 bits (65), Expect = 3.6
Identities = 34/128 (26%), Positives = 41/128 (32%), Gaps = 1/128 (0%)
Frame = +2
Query: 587 SPXPXXPPXXHRSAXXTXXXXXXXPGXPAA-AXQXXPPXPPI*PXXXXXXPRHSPXCLTX 763
+P P PP A T P P + A + PP PPI P P P +
Sbjct: 107 APTPPPPPR----APETPSQAPSPPPPPTSPATRAPPPPPPIAPATGGPPP---PPPIAP 159
Query: 764 XAVXXPXXLPXPLAXGXEVLPXPLXPRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXX 943
P P P+A V P P P + P PP P P PP
Sbjct: 160 ATGGPPP--PPPIAPAATV-PAPAVPLAAASPPPPSGGPPPP---PPPPPPPPPPPILEL 213
Query: 944 GXXPHLGA 967
P G+
Sbjct: 214 AAPPPPGS 221
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 34.3 bits (75), Expect = 0.22
Identities = 32/141 (22%), Positives = 37/141 (26%)
Frame = +2
Query: 590 PXPXXPPXXHRSAXXTXXXXXXXPGXPAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTXXA 769
P P PP + P P P PP P P + P
Sbjct: 104 PPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPS-PNAPYPPPPNPPY---PPP 159
Query: 770 VXXPXXLPXPLAXGXEVLPXPLXPRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGX 949
+ P P P P P P P PP P P PP
Sbjct: 160 LYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPN 219
Query: 950 XPHLGAPXXXPSPPXSPAXXP 1012
P+ P P+PP P P
Sbjct: 220 PPY-PPPPNAPNPPYPPPPNP 239
Score = 32.7 bits (71), Expect = 0.68
Identities = 29/127 (22%), Positives = 34/127 (26%), Gaps = 1/127 (0%)
Frame = +2
Query: 659 PGXPAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTXXA-VXXPXXLPXPLAXGXEVLPXPL 835
P P PP PP P P ++P P P P + P P
Sbjct: 95 PPPPYPPYPPPPPYPPP-PNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPN 153
Query: 836 XPRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXXPX 1015
P P PP P P P + P P P+PP P
Sbjct: 154 PPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPP 213
Query: 1016 XPXHXXP 1036
P P
Sbjct: 214 PPNAPNP 220
Score = 32.3 bits (70), Expect = 0.90
Identities = 40/171 (23%), Positives = 46/171 (26%), Gaps = 4/171 (2%)
Frame = +2
Query: 536 SSRXGSYPAXXAXXLXSSPXPXXPPXXHRSAXXTXXXXXXXPGXPAAAXQXXPPXPPI*P 715
S++ G +P P P PP P P A PP PP P
Sbjct: 77 SAKCGGHPPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPP--PPNAPYPPPPNPPYPP 134
Query: 716 XXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPXPLXPRTSRXXXPXXXXXPPXRL 895
P SP P P PL P P P P PP
Sbjct: 135 PPNAPYPP-SPNAPYPPPPNPPY--PPPL------YPPPPNPPPPNAPYPPPPYPPPPNP 185
Query: 896 VRAXPXXXPXPP----XHXXGXXPHLGAPXXXPSPPXSPAXXPXXPXHXXP 1036
P P PP + P P P+PP P P + P
Sbjct: 186 PYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPPNAPNPPYPPP 236
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 34.3 bits (75), Expect = 0.22
Identities = 23/94 (24%), Positives = 30/94 (31%)
Frame = +2
Query: 767 AVXXPXXLPXPLAXGXEVLPXPLXPRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXG 946
+V P + ++ G + P P P P PP P P PP
Sbjct: 346 SVVNPRAIVTDISAGINMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPP 405
Query: 947 XXPHLGAPXXXPSPPXSPAXXPXXPXHXXPRVXL 1048
P P P PP +P P P P + L
Sbjct: 406 PPP---PPPPPPPPPPAPPPPPPPPPPPPPALRL 436
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 32.3 bits (70), Expect = 0.90
Identities = 33/151 (21%), Positives = 40/151 (26%)
Frame = +2
Query: 584 SSPXPXXPPXXHRSAXXTXXXXXXXPGXPAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTX 763
S P P PP P PA PP PP P P + P T
Sbjct: 196 SPPIPTAPPTPPMPETPLPPGSPHIP--PAPLHPHIPPAPPN-PSKAIATP-NPPMPETP 251
Query: 764 XAVXXPXXLPXPLAXGXEVLPXPLXPRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXX 943
P P + + P P P P PP + P P
Sbjct: 252 LPPATPNPFIPPASPNPSIPPAPPNPSIPAPPNPSIPLAPPNPYIPPAPPNLFIPSAPPN 311
Query: 944 GXXPHLGAPXXXPSPPXSPAXXPXXPXHXXP 1036
P P+ P +P+ P P P
Sbjct: 312 PHIPPAPPNPYIPTAPPNPSIPPAPPNPSIP 342
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 29.9 bits (64), Expect = 4.8
Identities = 18/69 (26%), Positives = 22/69 (31%)
Frame = +2
Query: 830 PLXPRTSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPSPPXSPAXX 1009
P+ P+ + P PP R P P PP P AP PP S +
Sbjct: 1026 PVPPKR-KASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQP 1084
Query: 1010 PXXPXHXXP 1036
P P
Sbjct: 1085 VPPPRQPDP 1093
Score = 29.5 bits (63), Expect = 6.3
Identities = 29/124 (23%), Positives = 35/124 (28%), Gaps = 4/124 (3%)
Frame = +2
Query: 668 PAAAXQXXPPXPPI*PXXXXXXPRHSPXCLTXXAVXXPXXLPXPLAXGXEVLPX-PLXPR 844
PA+ P P P PR C ++ L P V P P
Sbjct: 981 PASRQSKAPIPHPSPPMQPAKPPRQHTQC----SIDPVPHLKPPGPTEQPVPPKRKASPP 1036
Query: 845 TSRXXXPXXXXXPPXRLVRAXPXXXPXPPXHXXGXXPHLGAPXXXPS---PPXSPAXXPX 1015
+++ P PP V P P PP P P PP P P
Sbjct: 1037 SAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPT 1096
Query: 1016 XPXH 1027
P H
Sbjct: 1097 NPAH 1100
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 29.1 bits (62), Expect = 8.3
Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Frame = +2
Query: 791 PXPLAXGXEVLPXPLXPRTSRXXXPXXXXXPPXRLV-RAXPXXXPXPPXHXXGXXPHL-G 964
P P A ++ P P ++ P PP P P P P L G
Sbjct: 426 PLPKAHNEKIAPLPSLRASAATLPPLPSDEPPPLPPDEEKPPPPPAPALPPLPLPPELPG 485
Query: 965 APXXXPSPPXSPAXXPXXPXH 1027
+P P P SP P P H
Sbjct: 486 SPGDSP-PATSPKQPPLPPKH 505
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,677
Number of Sequences: 59808
Number of extensions: 163404
Number of successful extensions: 396
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4211737845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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